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Form of dynamic modification
chromatin remodeling complexes which either move, eject or restructure nucleosomes. Besides actively regulating gene expression, dynamic remodeling of
Chromatin_remodeling
Complex of DNA and protein in eukaryotic cells
cellular process of DNA repair, the chromatin must be remodeled. In eukaryotes, ATP-dependent chromatin remodeling complexes and histone-modifying enzymes
Chromatin
ATP-dependent chromatin-remodeling protein complex in yeast
RSC (Remodeling the Structure of Chromatin) is a protein complex of the ATP-dependent chromatin remodeler family. The activity of the RSC complex allows
Chromatin structure remodeling (RSC) complex
Chromatin_structure_remodeling_(RSC)_complex
American biochemist (born 1954)
used to remodel chromatin, meaning that these specific domains of SWI/SNF have an effect on transcription factor-directed nucleosome remodeling. He was
Robert_E._Kingston
Basic structural unit of DNA packaging in eukaryotes
distinct reactions are associated with the term ATP-dependent chromatin remodeling. Remodeling enzymes have been shown to slide nucleosomes along DNA, disrupt
Nucleosome
Subfamily of ATP-dependent chromatin remodeling complexes
ATP-dependent chromatin remodeling complexes, which is found in eukaryotes. In other words, it is a group of proteins that associate to remodel the way DNA
SWI/SNF
(CHD) proteins is a subfamily of ATP-dependent chromatin remodeling complexes (remodelers). All remodelers fall under the umbrella of RNA/DNA helicase superfamily
Chromodomain helicase DNA-binding (CHD) subfamily
Chromodomain_helicase_DNA-binding_(CHD)_subfamily
Topics referred to by the same term
up remodeling in Wiktionary, the free dictionary. Remodeling is the process of improving a building. Remodeling may also refer to: Actin remodeling, a
Remodeling_(disambiguation)
Nucleosome Remodeling Factor (NURF) is an ATP-dependent chromatin remodeling complex first discovered in Drosophila melanogaster (fruit fly) that catalyzes
Nucleosome_remodeling_factor
Histone protein from the H2A family
histones H2A, H2B, H3 and H4, to form chromatin. H2AX contributes to nucleosome-formation, chromatin-remodeling and DNA repair, and is also used in vitro
H2AFX
Chromatin remodeling complex
complex in mammals is a chromatin remodeling complex with multiple subunits that regulate gene expression by altering chromatin accessibility and DNA access
Mammalian SWI/SNF (BAF) complex
Mammalian_SWI/SNF_(BAF)_complex
Protein-coding gene in the species Homo sapiens
by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SWI/SNF,
SMARCA4
Protein-coding gene in the species Homo sapiens
by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and
SMARCD1
Protein-coding gene in humans
ATP-dependent 'chromatin' or 'nucleosome' remodeling factor that in humans is encoded by the CHD7 gene. CHD7 is an ATP-dependent chromatin remodeler homologous
CHD7
Protein complex
Mi-2/NuRD (Nucleosome Remodeling Deacetylase) complex, is a group of associated proteins with both ATP-dependent chromatin remodeling and histone deacetylase
Mi-2/NuRD_complex
Overview article
called chromatin remodeling. Chromatin remodeling is one apparatus through which epigenetics acts. There are three mechanisms of chromatin remodeling that
Transgenerational epigenetic inheritance in plants
Transgenerational_epigenetic_inheritance_in_plants
Study of DNA modifications that do not change its sequence
recruitment and activation of the chromatin remodeling protein, ALC1, that can cause nucleosome remodeling. Nucleosome remodeling has been found to cause, for
Epigenetics
Enzymes that catalyze acyl group transfer from acetyl-CoA to histones
manipulate chromatin structure and lay an epigenetic framework makes them essential in cell maintenance and survival. The process of chromatin remodeling involves
Histone_acetyltransferase
Protein-coding gene in humans
encoded by the ARID1B gene. ARID1B is a component of the human SWI/SNF chromatin remodeling complex. Germline mutations in ARID1B are associated with Coffin–Siris
ARID1B
Protein-coding gene in the species Homo sapiens
ribose chain) on DDB2 that attracts the DNA remodeling protein ALC1. Action of ALC1 relaxes the chromatin at the site of UV damage to DNA. This relaxation
DDB2
InterPro Family
are co-expressed and appear to function cooperatively during sperm chromatin remodeling, with NPM2 serving as the dominant oocyte form and NPM1 and NPM3
Nucleoplasmin
Protein found in humans
regulates several key functions including: cell cycle progression, chromatin remodeling and neurological and placental development in mice. In humans, CUL4B
Cullin-4B
American biologist and entrepreneur
mammalian SWI/SNF complex, a large molecular machine known as a Chromatin remodeling complex. She was named as one of the world's leading scientists by
Cigall_Kadoch
Protein-coding gene in the species Homo sapiens
the INO80B gene. This gene encodes a subunit of an ATP-dependent chromatin remodeling complex, INO80, which plays a role in DNA and nucleosome-activated
INO80_complex_subunit_B
RNA family
(2012). "HTLV-1 Tax mediated downregulation of miRNAs associated with chromatin remodeling factors in T cells with stably integrated viral promoter". PLOS ONE
Mir-873 microRNA precursor family
Mir-873_microRNA_precursor_family
Protein-coding gene in humans
for a DNA helicase that function as a transcription repressor by remodeling chromatin structure by altering the position of nucleosomes. CHD8 negatively
CHD8
Medical condition
gene is required for chromatin remodeling, a process that regulates gene expression. By allowing for the creation of chromatin, the CHD3 gene affects
Snijders Blok–Campeau syndrome
Snijders_Blok–Campeau_syndrome
Medical condition
predisposes children to malignancies. INI1/hSNF5, a component of the chromatin remodeling SWI/SNF complex, is a critical tumor suppressor biallelically inactivated
Atypical teratoid rhabdoid tumor
Atypical_teratoid_rhabdoid_tumor
Chromatin remodeling protein that is widely conserved across many eukaryotic organisms
protein that, in humans, is encoded by the CHD1 gene. CHD1 is a chromatin remodeling protein that is widely conserved across many eukaryotic organisms
CHD1
Beings that can respire with and without oxygen
either obligate aerobes or anaerobes, there were varying levels of chromatin-remodeling proteins. The obligate aerobes were later found to have a defective
Facultative anaerobic organism
Facultative_anaerobic_organism
Protein-coding gene in the species Homo sapiens
γH2AX (the phosphorylated form of the H2AX protein) (see Chromatin remodeling). Chromatin remodeling initiated by γH2AX depends on RNF8, as described below
RNF8
Protein-coding gene in humans
/ helicase domain, and thus it belongs to the SWI/SNF family of chromatin remodeling proteins. ATRX is required for deposition of the histone variant
ATRX
Protein-coding gene in the species Homo sapiens
by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and
SMARCD2
Lightly packed form of chromatin that is enriched in genes
phosphorylation is involved with gene expression, DNA damage repair, and chromatin remodeling. Another method of regulation that incorporates a negative charge
Euchromatin
Protein-coding gene in the species Homo sapiens
coactivation when associated with hepatitis B virus X protein (HBX), and chromatin remodeling and spacing when associated with SNF2H (MIM 603375).[supplied by
RSF1
Cellular mechanism
of action. To allow DNA repair, the chromatin must be remodeled. In eukaryotes, ATP dependent chromatin remodeling complexes and histone-modifying enzymes
DNA_repair
mechanism of chromatin remodeling. In 1994, his group discovered that enzymatic activity was necessary for creating accessible DNA sites on chromatin. The following
Carl_Wu
Process of copying a segment of DNA into RNA
marks, or creating an overall repressive chromatin environment through nucleosome remodeling and chromatin reorganization. As noted in the previous section
Transcription_(biology)
Protein-coding gene in the species Homo sapiens
by altering the chromatin structure around those genes. The protein encoded by this gene is a component of the chromatin remodeling and spacing factor
SMARCA5
American biologist
laboratory focuses on epigenetic regulation by the BAF (SWI/SNF) chromatin remodeling complexes in diverse physiological processes including development
Diana_Hargreaves
Proteine
of the five major DNA chromatin remodeling complex types, or subfamilies, found in most eukaryotic organisms. ISWI remodeling complexes place nucleosomes
Imitation_SWI
Protein found in humans
protein. CUL4A regulates numerous key processes such as DNA repair, chromatin remodeling, spermatogenesis, haematopoiesis and the mitotic cell cycle. As a
Cullin-4A
Protein-coding gene in the species Homo sapiens
by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI,
SMARCA2
The INO80 subfamily of chromatin remodeling complexes are ATPases, and includes the INO80 and SWR1 complexes. One of the main roles of the INO80 subfamily
INO80_Subfamily
Protein family
molecular biology, a SANT domain is a protein domain that allows many chromatin remodeling proteins to interact with histones. The name SANT is an acronym standing
SANT_domain
Heritable characteristics affecting learning
one of the main mechanisms implicated in the process of chromatin remodeling. Chromatin remodeling affects the regulation of gene expression by altering
Epigenetics in learning and memory
Epigenetics_in_learning_and_memory
Protein-coding gene in the species Homo sapiens
PBRM1 is one of three unique components of the SWI/SNF-B (PBAF) chromatin-remodeling complex, which contains at least SMARCA4/BRG1, SMARCB1/SNF5/INI1/BAF47
PBRM1
Damage in DNA which occurs naturally
eukaryotes, ATP-dependent chromatin remodeling complexes and histone-modifying enzymes are two factors that act to accomplish this remodeling process after DNA
DNA damage (naturally occurring)
DNA_damage_(naturally_occurring)
Mammalian protein found in Homo sapiens
scaffold to recruit proteins involved in DNA replication, DNA repair, chromatin remodeling and epigenetics. Many proteins interact with PCNA via the two known
Proliferating cell nuclear antigen
Proliferating_cell_nuclear_antigen
Histone methylation on tail of histone H3
trimethylation regulates gene expression through chromatin remodeling by the NURF complex. This makes the DNA in the chromatin more accessible for transcription factors
H3K4me3
Field of study
recruitment of chromatin remodeling complexes by the binding of activator molecules to corresponding enhancer regions. The nucleosome remodeling complexes
Epigenomics
American geneticist
epigenetic regulation of gene expression. His laboratory identified chromatin remodeling factors important for gene regulation in normal and cancer cells
John_Charles_Lucchesi
Molecule that carries genetic information
is wrapped in the chromatin structure or else by remodeling carried out by chromatin remodeling complexes (see Chromatin remodeling). There is, further
DNA
Protein-coding gene in the species Homo sapiens
compartments. MTA1 is a component of several chromatin remodeling complexes including the nucleosome remodeling and deacetylation complex (NuRD). MTA1 regulates
MTA1
Bivalent chromatin are segments of DNA, bound to histone proteins, that have both repressing and activating epigenetic regulators in the same region.
Bivalent_chromatin
Plant gene
maize. The protein has been described to be similar to the SWI2/SNF2 chromatin remodeling proteins. Since DNA methylation occurs mostly in transposable elements
Decrease_in_DNA_Methylation_I
Protein-coding gene in the species Homo sapiens
SMARCA5, POLE3, and CHRAC1 comprise the WCRF/CHRAC ATP-dependent chromatin-remodeling complex. The purified CHRAC complex can mobilize nucleosomes into
BAZ1A
Thick granular layer of the cerebellar cortex
Zhao, Guoyan; Gabel, Harrison W.; Bonni, Azad (July 9, 2020). "The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain". Nature
Cerebellar_granule_cell
Family of proteins that form microfilaments
GR (1 January 2002). "Nuclear actin and actin-related proteins in chromatin remodeling". Annual Review of Biochemistry. 71 (1): 755–781. Bibcode:2002ARBio
Actin
Protein-coding gene in the species Homo sapiens
by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SWI/SNF and
SMARCC1
Protein-coding gene in the species Homo sapiens
and IL-2 expression by recruitment of HDAC1 as part of the NuRD chromatin remodeling complex to a SATB1-bound site in the IL-2Ralpha and IL-2 locus, regulating
SATB1
Protein-coding gene in humans
BET inhibitors such as JQ1 block the region of BRDT responsible for chromatin binding, and cause a reversible reduction of sperm production, sperm quality
BRDT
Protein-coding gene in the species Homo sapiens
Nagasawa H, Matsumoto T, Yanagisawa J, Kato S (June 2003). "The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired
SMARCB1
Protein-coding gene in the species Homo sapiens
by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and
SMARCC2
Non-coding RNA element
ribosomal RNA transcription by interacting with TIP5, part of the NoRC chromatin remodeling complex. Ribosomal RNA genes (rDNA) encodes for ribosomal RNA (rRNA)
NoRC_associated_RNA
Protein domain
involved in gene regulation and chromatin remodeling, facilitating both gene silencing and activation by modifying chromatin structure. Chromodomain-containing
Chromodomain
Type of proteins that maintain gene expression
classes based on molecular function: histone-modifying TrxG proteins chromatin-remodeling TrxG proteins DNA-binding TrxG proteins, plus other TrxG proteins
Trithorax-group_proteins
Taiwanese-American neuroscientist
for her research on Alzheimer's disease and the role of CDK5 and chromatin remodeling in the progression of the disease. Additionally, her laboratory has
Li-Huei_Tsai
Protein-coding gene in the species Homo sapiens
ATP-dependent chromatin remodeling complex SWI/SNF, which is required for transcriptional activation of genes normally repressed by chromatin. The encoded
SMARCE1
Field of study
the regulation and expression of genes such as DNA methylation and chromatin remodeling. These epigenetic mechanisms are believed to be a contributing factor
Epigenetics of diabetes type 2
Epigenetics_of_diabetes_type_2
Plant part that is different from the rest
modifications, including histone modification, DNA methylation, chromatin remodeling and RNA silencing. If the clonal descendants of a modified cell eventually
Sport_(botany)
Transcription factor
is done by chromatin remodelling by either balancing histone modifications or directly with pioneer factors that can loosen the chromatin themselves or
Pioneer_factor
Protein domain which is involved in DNA binding
DNA-binding of chromatin-associated high-mobility group proteins. HMG-boxes are present in many transcription factors and chromatin-remodeling complexes,
HMG-box
Canadian researcher and molecular biologist
the tumor suppressor kinase LKB1, and its role in regulating the chromatin remodeling protein SMARCA4 and modeling metabolic processes in breast and lung
Paola_Marignani
Group of proteins
serve an active role in chromatin remodeling and as result play a role in the cell cycle and cellular differentiation where chromatin compaction and de-compaction
HMGN
Biological processes used in gene regulation
histone acetylation mechanisms and can effectively inhibit abnormal chromatin remodeling in cancerous cells. Targets of Vorinostat includes HDAC1, HDAC2,
Histone acetylation and deacetylation
Histone_acetylation_and_deacetylation
Loose connective tissue composed mostly by adipocytes
regulates brown adipogenesis via the histone reader DPF3 and the BAF chromatin remodeling complex". Genes & Development. 31 (7): 660–673. doi:10.1101/gad.294405
Adipose_tissue
Induction of a plant's flowering process
VERNALIZATION2 (VRN2) polycomb-like complex to reduce FLC expression through chromatin remodeling. Levels of VRN2 protein increase during long-term cold exposure as
Vernalization
Tumor of the adrenal medulla which secretes adrenal hormones
Q, Iwata S, Silva GM, et al. (May 2016). "Recurrent Mutations of Chromatin-Remodeling Genes and Kinase Receptors in Pheochromocytomas and Paragangliomas"
Pheochromocytoma
Protein-coding gene in the species Homo sapiens
dependent regulator of chromatin, subfamily a, member 1". Bozhenok L, Wade PA, Varga-Weisz P (2002). "WSTF-ISWI chromatin remodeling complex targets heterochromatic
SMARCA1
Research institute in Pune, India
India, which works on cell-culture, cell-repository, immunology, chromatin-remodelling. "National Centre for Cell Science". "India launches research on
National Centre for Cell Science
National_Centre_for_Cell_Science
Protein-coding gene in humans
the CHD5 gene. It is a part of the CHD subfamily of ATP-dependent chromatin remodeling complexes. GRCh38: Ensembl release 89: ENSG00000116254 – Ensembl
CHD5
Molecular biologist
kinase-dependent manner and depend on the recruitment of the INO80 chromatin-remodeling complex. They also were first to show the relocation of persistent
Susan_M._Gasser
Protein-coding gene in the species Homo sapiens
1186/s12958-022-01018-w. PMC 9555066. PMID 36224627. Kouzarides T (February 2007). "Chromatin modifications and their function". Cell. 128 (4): 693–705. doi:10.1016/j
PADI4
Second subphase of interphase
and recruits the Tip60 chromatin remodeling complex to the promoters of histone genes. Tip60 activity removes inhibitory chromatin structures and drives
S_phase
American geneticist
importance of epigenetics in cancer. Her laboratory has identified chromatin remodeling signals and processes that predispose cells to be transformed into
Mitzi_Kuroda
important physical chromatin property that determines its biological function. NRL can be determined genome-wide for the chromatin in a given cell type
Nucleosome_repeat_length
transcription. Another form of transcriptional derepression uses chromatin remodeling complexes. For transcription to occur, RNA polymerase needs to have
Derepression
Family of proteins that play a role in chromatin remodeling
family of protein complexes first discovered in fruit flies that can remodel chromatin such that epigenetic silencing of genes takes place. Polycomb-group
Polycomb-group_proteins
Medical condition
tumorigenesis and metastasis. Moreover, mutation of gene involved in chromatin remodeling (SETD2, BAP1, or PBRM) may lead to higher rate of TFE3/TFEB fusion
Papillary renal cell carcinoma
Papillary_renal_cell_carcinoma
Protein-coding gene in humans
canonical Wnt signaling pathway regulation of gene expression chromatin remodeling chromatin organization Sources:Amigo / QuickGO Orthologs Databases NCBI:
Lysine-specific demethylase 6A
Lysine-specific_demethylase_6A
Segment of nucleic acid that affects the expression of associated genes
histone marks or creating an overall repressive chromatin environment through nucleosome remodeling and chromatin reorganization. Transcription factors are
Regulatory_sequence
Protein-coding gene in the species Homo sapiens
vesicular transport, spindle orientation, nuclear migration and chromatin remodeling. This gene encodes a subunit of the BAF (BRG1/brm-associated factor)
ACTL6B
Paired organ of the urogenital system in mammals
differentiation. As the mesonephric ducts regress, they undergo significant chromatin remodeling and move to surround the paramesonephric duct. Cells from the Wolffian
Mesonephric_duct
Rare cancer of the extremities, often near joints or tendon sheaths
repressor domains of SSX. It also incorporates into the SWI/SNF chromatin remodeling complex, a well known tumor suppressor. SS18-SSX is thought to underlie
Synovial_sarcoma
Heritable characteristics affecting sleep
dynamic changes in chromatin transitions. It has been found that there are links to circadian regulators, the remodeling of chromatins, and cellular metabolism
Sleep_epigenetics
Genetic recombination between identical or highly similar strands of genetic material
recombination (HR) DNA repair, the chromatin must be remodeled. In eukaryotes, ATP dependent chromatin remodeling complexes and histone-modifying enzymes
Homologous_recombination
Protein-coding gene in the species Homo sapiens
encoded by the SS18 gene. SS18 is a member of the human SWI/SNF chromatin remodeling complex. SS18 is involved in a chromosomal translocation commonly
SS18
Genetic mutation not inherited from a parent
associated with autism spectrum disorder, leading to dysregulated chromatin remodeling and altered gene expression during brain development. Has also played
De_novo_mutation
Protein family around which DNA winds to form nucleosomes
Unlike enzymatic chromatin remodeling, histone chaperones function by binding histones in a regulated manner, modulating chromatin structure without
Histone
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CHROMATIN REMODELING
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CHROMATIN REMODELING
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