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Most common variant of a genetic sequence across samples
molecular biology and bioinformatics, the consensus sequence (or canonical sequence) is the calculated sequence of most frequent residues, either nucleotide
Consensus_sequence
Nucleic acid motif in molecular biology
The Kozak consensus sequence (Kozak consensus or Kozak sequence) is a nucleic acid sequence that functions as the protein translation initiation site
Kozak_consensus_sequence
Bioinformatic graphic
sequences). A sequence logo is created from a collection of aligned sequences and depicts the consensus sequence and diversity of the sequences. Sequence logos
Sequence_logo
Topics referred to by the same term
database. Consensus sequence, the order of nucleotide or amino acid residues most frequently found within a DNA, RNA or protein sequence. Consensus theorem
Consensus
Ribosomal binding site in prokaryotic messenger RNA
mitochondrial transcripts. The six-base consensus sequence is AGGAGG; in Escherichia coli, for example, the sequence is AGGAGGU, while the shorter GAGG dominates
Shine–Dalgarno_sequence
DNA sequence
called the Pribnow box which has a shorter consensus sequence. The TATA box is considered a non-coding DNA sequence (also known as a cis-regulatory element)
TATA_box
Initiation site for the opening of the DNA double helix
initiation. In prokaryotes, DUEs are found in the form of tandem consensus sequences flanking the 5' end of DnaA binding domain. The act of unwinding
DNA_unwinding_element
Measurement in DNA sequencing
scores is the automatic determination of accurate, quality-based consensus sequences. Phred quality scores Q {\displaystyle Q} are logarithmically related
Phred_quality_score
Distinct pattern of nucleotides in molecular biology
box or CAT box) is a distinct pattern of nucleotides with GGCCAATCT consensus sequence that occur upstream by 60–100 bases to the initial transcription site
CAAT_box
Nucleotide or amino-acid sequence pattern
Such techniques belong to the discipline of bioinformatics. See also consensus sequence. Consider the N-glycosylation site motif mentioned above: Asn, followed
Sequence_motif
Region of DNA encouraging transcription
element) has the consensus sequence TATAAT. The sequence at -35 (the -35 element) has the consensus sequence TTGACA. The above consensus sequences, while conserved
Promoter_(genetics)
Protein-coding gene in the species Homo sapiens
Interferon regulatory factor 8 (IRF8) also known as interferon consensus sequence-binding protein (ICSBP), is a protein that in humans is encoded by the
IRF8
Succession of nucleotides in a nucleic acid
Shine-Dalgarno sequence, the Kozak consensus sequence and the RNA polymerase III terminator. In bioinformatics, a sequence entropy, also known as sequence complexity
Nucleic_acid_sequence
DNA sequence required in bacterial promoters for transcription
DNA for transcription to occur in bacteria. It is an idealized or consensus sequence—that is, it shows the most frequently occurring base at each position
Pribnow_box
is sequenced several times in the same direction. If a consensus base is covered by both high-quality sequence and (discrepant) low-quality sequence, Phrap's
Phrap
surrounded upstream and downstream by a favorable sequence known as the "Kozak consensus sequence" or "Kozak context". (See A) Weak or absent Kozak context
Translation regulation by 5′ transcript leader cis-elements
Translation_regulation_by_5′_transcript_leader_cis-elements
Concept in computer science
can solve consensus among any number of processes and they can simulate any other objects through an operation sequence. Uniform consensus Quantum Byzantine
Consensus_(computer_science)
transcription initiation without a functional TATA box. It has the consensus sequence YYA+1NWYY in humans. Similarly to the TATA box, the Inr element facilitates
Initiator_element
DPE consensus sequence was originally thought to be RGWCGTG, however more recent studies have suggested it to be the similar but more general sequence RGWYV(T)
Downstream_promoter_element
Professor of Biochemistry
established the scanning model of translation initiation and the Kozak consensus sequence. Her last publication was in 2008. Kozak was listed as one of the
Marilyn_Kozak
functioning of the origin. Element A is highly conserved, consisting of the consensus sequence: 5'- T/A T T T A Y R T T T T/A -3' (where Y is either pyrimidine and
Autonomously replicating sequence
Autonomously_replicating_sequence
Technique used to study DNA and RNA
large sets of consensus sequences are multiplexed in each reaction, and where one set competes for binding, the individual consensus sequences from this set
Electrophoretic mobility shift assay
Electrophoretic_mobility_shift_assay
Attachment of an oligosaccharide to a nitrogen atom
attachment of a glycan residue to a protein requires the recognition of a consensus sequence. N-linked glycans are almost always attached to the nitrogen atom
N-linked_glycosylation
Process by which a gene can code for multiple proteins
branchpoint is always an A; the consensus around this sequence varies somewhat. In humans the branch site consensus sequence is yUnAy. The branch site is
Alternative_splicing
Type of amino acid sequence
mediator. Chelsky et al. proposed the consensus sequence K-K/R-X-K/R for monopartite NLSs. A Chelsky sequence may, therefore, be part of the downstream
Nuclear_localization_sequence
Highly specific protease
high sequence specificity, TEV protease is frequently used for the controlled cleavage of fusion proteins in vitro and in vivo. The consensus sequence recognized
TEV_protease
Process in bioinformatics that identifies equivalent sites within molecular sequences
For multiple sequences the last row in each column is often the consensus sequence determined by the alignment; the consensus sequence is also often
Sequence_alignment
DNA sequence that jumps/transposes within a genome
repeat identification involves building a consensus of each family of sequences. A consensus sequence is a sequence that is created based on the repeats that
Transposable_element
conditions. The inositol-sensitive upstream activation sequence (UASINO) has a consensus sequence 5'-CATGTGAAAT-3' and is present in the promoter regions
Upstream_activating_sequence
Proteins that bind DNA
transcription factors bind to the W-box promoter element that has a consensus sequence of TTGACC/T. Individual WRKY proteins do appear in the human protozoan
WRKY_transcription_factor
Phenomenon in which different mutations at the same locus cause the same phenotype
altered compared to a consensus sequence. They can also exist as copy number variants (CNV) in which the copies of a gene or DNA sequence is different from
Allelic_heterogeneity
Type of peptide chain
A target peptide is a short (3-70 amino acids long) peptide consensus sequence that directs the transport of a protein to a specific region in the cell
Target_peptide
Use of related sequences to construct an ancestral-like gene
complementing experiments to indicate that the derived sequences are more than just consensuses of the input sequences. This is particularly necessary in the observation
Ancestral sequence reconstruction
Ancestral_sequence_reconstruction
Biological mechanism for routing proteins
proteins to specific intracellular or extracellular locations. While no consensus sequence has been identified for signal peptides, many nonetheless possess
Protein_targeting
levels of gene expression. The lacUV5 promoter sequence conforms more closely to the consensus sequence recognized by bacterial sigma factors than the
LacUV5
Sequence of nucleotides
region of the mRNA has the consensus 5'-AGGAGG-3', also called the Shine-Dalgarno (SD) sequence. The complementary sequence (CCUCCU), called the anti-Shine-Dalgarno
Ribosome-binding_site
110 bases upstream from the transcription initiation site. It has a consensus sequence GGGCGG which is position-dependent and orientation-independent. The
GC_box
box (consensus sequence TATAAA), which contains the stop codon TAA. Bacterial promoter elements at ~10 bases exhibits a TATA box with a consensus of TATAAT
Split_gene_theory
combining many alignments into one consensus sequence, multiple genome alignment (can cope with rearrangements). Sequence alignment software Clustal Official
Align-m
Sequence of DNA that determines traits in an organism
to initiate transcription. The recognition typically occurs as a consensus sequence like the TATA box. A gene can have more than one promoter, resulting
Gene
Population structure of viruses with a large number of variant genomes
viruses than is offered by classical studies based on simplified consensus sequences. The quasispecies model is most applicable when the genome size is
Viral_quasispecies
Post-translational modification
catalyzes the addition of one geranylgeranyl group onto the C-terminal consensus sequence CAAL (somewhat similar to farnesyltransferase reactions), where C=cysteine
Geranylgeranylation
Dataset of protein-coding regions
The Consensus Coding Sequence (CCDS) Project is a collaborative effort to maintain a dataset of protein-coding regions that are identically annotated
Consensus_CDS_Project
Polysaccharides found in animal tissue
consensus sequence of E(E/L)PFPS. Additionally, for three other keratan sulfated proteoglycans, lumican, keratocan, and mimecan (OGN), the consensus sequence
Glycosaminoglycan
Protein family
into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins
B-box_zinc_finger_domain
Region of DNA adjacent to the 5′ end of the gene
consensus sequence of 6 nucleotides each. Bacterial RNA polymerase binds to these regions to align itself and begin transcription. Promoter sequences
5′_flanking_region
Genus of bacteria
to a consensus sequence present within the coding sequences of at least some Bvg-repressed genes. Binding of this protein to the consensus sequence represents
Bordetella
Mechanism in eukaryotic translation
GCCRCCAUGG, also known as a “Kozak Consensus Sequence.” Purine (R) and each of the nucleotides within this sequence are highly conserved and provide an
Leaky_scanning
Universal notation of DNA nucleotides
positional variations in order to report DNA sequencing errors, consensus sequences, or single-nucleotide polymorphisms. The IUPAC notation, including
Nucleic_acid_notation
RNA sequence
nonconsensus sequence, a nearby Pumilio-binding element (PBE) is necessary for translational activation to result. If the CPE has a consensus sequence, the presence
Cytoplasmic polyadenylation element
Cytoplasmic_polyadenylation_element
Self-cleaving ribozyme
identified based on application of comparative sequence and structural algorithms. The consensus sequence and secondary structure of this class includes
Hatchet_ribozyme
Process in genetics
transcription requires promoter regions, which are specific nucleotide consensus sequences that tell the σ-factor on RNA polymerase where to bind to the DNA
Bacterial_transcription
Topics referred to by the same term
(disambiguation), multiple values used in electrical engineering Short consensus sequence repeat (SCR) or complement control protein (CCP) repeat Signal Corps
SCR
Protein found in humans
protein that in humans is encoded by the CABP2 gene. CaBP2 contain a consensus sequence for N-terminal myristoylation, akin to members of the recoverin subfamily
Calcium_binding_protein_2
Set of overlapping DNA segments that together represent a consensus region of DNA
that together represent a consensus region of DNA. In bottom-up sequencing projects, a contig refers to overlapping sequence data (reads); in top-down
Contig
2009 film by Tom Six
The Human Centipede (First Sequence) is a 2009 Dutch body horror film written, directed and co-produced by Tom Six. The independent film concerns a deranged
The Human Centipede (First Sequence)
The_Human_Centipede_(First_Sequence)
Class of enzyme complexes
proteins varies in length and sequence and is referred to as hypervariable. Thus Rab proteins do not have a consensus sequence, such as the CAAX box, which
Rab_geranylgeranyltransferase
Scientific instrument that automates the DNA sequencing process
Reference Mapper maps short reads to a reference genome, generating a consensus sequence. The software is able to generate output files for assessment, indicating
DNA_sequencer
Viral protein
several crystalline forms have been determined based on the same consensus sequence BK (HCV-BK, genotype 1). The structure can be represented by a right
Hepatitis C virus nonstructural protein 5B
Hepatitis_C_virus_nonstructural_protein_5B
3D conformation of a biological sequence, like DNA, RNA, proteins
such as U1, U2, U4, U5, U6, U12 and U3, the Shine-Dalgarno sequence, the Kozak consensus sequence and the RNA polymerase III terminator. The secondary structure
Biomolecular_structure
Synthetic DNA transposon for vertebrate genetic modification
2). T had the closest IR/DR sequence to the consensus sequence for the extinct Tc-1 like transposons in fish. The consensus transposon has IRs of 231 base
Sleeping Beauty transposon system
Sleeping_Beauty_transposon_system
quality scores. SOAPsnp is a consensus sequence builder. This tool uses the output from SOAPaligner to generate a consensus sequence which enables SNPs to be
Short Oligonucleotide Analysis Package
Short_Oligonucleotide_Analysis_Package
DNA sequences with no known biological function
bp downstream from the gene's coding sequences and is composed of 30 to 100 units of a 28-bp consensus sequence. Thirty alleles of 1000 to 3000 bp have
Junk_DNA
Amino acid sequence
polymerase is directed to a specialized set of promoters with a different consensus sequence. Jang, Sei Heon; Jaehnings, Judith A. (1991). "The Yeast Mitochondrial
Specificity_factor
Topics referred to by the same term
(disambiguation) Cossack (disambiguation) Kossak, a surname Kozak consensus sequence, a eukaryotic DNA sequence for ribosome binding This disambiguation page lists
Kozak
Protein found in humans
kunitz-type and WAP-type four-disulfide core (WFDC) protease inhibitor consensus sequences. Most WFDC genes are localized to chromosome 20q12-q13 in two clusters:
Eppin
The viral nonstructural protein NSP3 specifically binds the 3'-end consensus sequence of viral mRNAs and interacts with the eukaryotic translation initiation
Rotavirus_translation
Software in bioinformatics
regions. Early de novo sequence assemblers, such as SEQAID (1984) and CAP (1992), used greedy algorithms, such as overlap-layout-consensus (OLC) algorithms
De_novo_sequence_assemblers
Insect protein
sequence (GGRPSDSYGAPGGGN); segment corresponding to exon 2 contains 62 amino acids of the chitin-binding Rebers-Riddiford (R-R) consensus sequence (Pfam
Resilin
Type of motif in immunology
represent any immunoreceptor tyrosine-based inhibitory-like sequence motif, with the consensus sequence I/V/L/SxYxxL/V, found in a kinase and regulating its
Kinase tyrosine-based inhibitory motif
Kinase_tyrosine-based_inhibitory_motif
Congenital Conjugation tube Consanguineous Consanguinity Consensus sequence Conserved sequence Constant region Constitutive gene Contig Contig map Contig
Index_of_genetics_articles
Alteration in the nucleotide sequence of a genome
the standard or so-called "consensus" sequence. This step requires a tremendous scientific effort. Once the consensus sequence is known, the mutations in
Mutation
2011 film by Tom Six
with a weighted average of 3.28/10. The site's consensus reads: "The Human Centipede II (Full Sequence) attempts to weave in social commentary but as
The Human Centipede 2 (Full Sequence)
The_Human_Centipede_2_(Full_Sequence)
2015 film by Tom Six
The Human Centipede 3 (Final Sequence) is a 2015 black comedy body horror film written and directed by Tom Six and starring Dieter Laser and Laurence R
The Human Centipede 3 (Final Sequence)
The_Human_Centipede_3_(Final_Sequence)
Mutation at a location where intron splicing takes place
of precursor messenger RNA into mature messenger RNA. Splice site consensus sequences that drive exon recognition are located at the very termini of introns
Splice_site_mutation
and consensus accuracy. Read accuracy refers to the called base's accuracy to a known reference. Consensus accuracy refers to how accurate a consensus sequence
Base_calling
Regions of DNA capable of binding to biomolecules
consensus sequences. This is because they target mostly identical sequences and restriction efficiency decreases abruptly for less similar sequences.
DNA_binding_site
Conflicts among Wikipedia editors
categorized articles into three levels of disputation: "Consensus", "Sequence of temporary consensuses", and "Never-ending wars". For content disagreements
Disputes_on_Wikipedia
Dutch thoracic oncologist
and colleagues described synthetic microRNA mimics designed from a consensus sequence of the miR-15/107 group of microRNAs. In laboratory studies, the mimics
Nico_van_Zandwijk
Family of viruses
Pol4. The CRE loop has a defined consensus sequence to which the initiation components bind, but no consensus sequence exists for the supporting stem,
Picornavirus
Mobile genetic element in the primate genome (including human genome)
PMC 4333407. PMID 25550429. Vansant, G; Reynolds, W. F (1995). "The consensus sequence of a major Alu subfamily contains a functional retinoic acid response
Alu_element
Class of protein kinase enzymes
phosphoacceptor site, which together comprise the consensus sequence. Since the consensus sequence residues of a target substrate only make contact with
Serine/threonine-specific protein kinase
Serine/threonine-specific_protein_kinase
RNA family
overexpressed. The prrB gene sequence contains a number of imperfect repeats of the consensus sequence 5′-AGGA-3′, and sequence analysis predicted a complex
PrrB/RsmZ_RNA_family
Molecular biology sequencing technique
able to sequence up to 1 Mb. Multiple methods of long-read sequencing exist, but for the foundational Fiber-seq experiments, circular consensus sequencing
Fiber-Seq
RNA family
localised in the cytoplasm. Dictyostelium class I and II share a consensus sequence (5'-CCUUACAGCAA-3') which is found in an 'open' area of the secondary
Dictyostelium_class_II_RNA
Insoluble protein aggregate with a fibrillar morphology
the β amyloid peptide do not have a simple consensus sequence and are thought to aggregate through the sequence segments enriched with hydrophobic residues
Amyloid
Protein-coding gene in the species Homo sapiens
protein to the dynein light chain protein affects binding to GATA consensus sequences and suppresses its transcriptional activity. Defects in this gene
TRPS1
Protein domain
recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence. RRM proteins have a variety of RNA binding preferences and functions
RNA_recognition_motif
Preparation and analysis method for DNA
A consensus sequence is then generated for each family using the identical sequences in each position of the remaining reads. The consensus sequence is
Duplex_sequencing
Pan-genome Graph Construction Methodology
Traditional linear reference genomes represent only a single consensus genome sequence, capturing just one version of each genomic locus. This approach
Pan-genome_graph_construction
Red wine grape variety
; Demattè, L.; et al. (December 19, 2007). "A high quality draft consensus sequence of the genome of a heterozygous grapevine variety". PLOS ONE. 2 (12)
Pinot_noir
Class of enzymes
122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence
Palmitoyl(protein)_hydrolase
tetratricopeptide repeats (TPRs) which typically contains 34 amino acids with the consensus sequence [WLF]-X(2)-[LIM]-[GAS]-X (2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE]
IFIT_proteins
Cholesterol-binding protein domain
been found. CRAC (cholesterol-recognition amino acid consensus) is defined by the amino acid sequence (L/V)-X1–5-(Y)-X1–5-(K/R) where X1-5 represents any
Cholesterol_consensus_domain
for further synthesis. A short, genetically-encoded peptide with a consensus sequence LCxPxR is introduced into fusion proteins, and by subsequent treatment
Aldehyde_tag
Genes that affect limb and heart development
and sufficient for sequence-specific DNA binding. All members of the T-box gene family bind to the "T-box", a DNA consensus sequence of TCACACCT. T-boxes
T-box
Protein family
Rotavirus protein NSP3 (NS34) is bound to the 3' end consensus sequence of viral mRNAs in infected cells. Four nucleotides are the minimal requirement
NSP3_(rotavirus)
Type of transposable element
to shed light on the different steps of transposition. Based on a consensus sequence, it reconstructed the likely ancestor of the Helibat family of helitrons
Helitron
Branch of bioinformatics
For multiple sequences the last row in each column is often the consensus sequence determined by the alignment; the consensus sequence is also often
Biological_data_visualization
Sulfur-containing amino acid
of protein translation from mRNA when the AUG codon is in a Kozak consensus sequence. As a consequence, methionine is often incorporated into the N-terminal
Methionine
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CONSENSUS SEQUENCE
CONSENSUS SEQUENCE
Surname or Lastname
English
English : from a medieval male personal name (from Latin Hilarius, a derivative of hilaris ‘cheerful’, ‘glad’, from Greek hilaros ‘propitious’, ‘joyful’). The Latin name was chosen by many early Christians to express their joy and hope of salvation, and was borne by several saints, including a 4th-century bishop of Poitiers noted for his vigorous resistance to the Arian heresy, and a 5th-century bishop of Arles. Largely due to veneration of the first of these, the name became popular in France in the forms Hilari and Hilaire, and was brought to England by the Norman conquerors.English : from the much rarer female personal name Eulalie (from Latin Eulalia, from Greek eulalos ‘eloquent’, literally well-speaking, chosen by early Christians as a reference to the gift of tongues), likewise introduced into England by the Normans. A St. Eulalia was crucified at Barcelona in the reign of the Emperor Diocletian and became the patron of that city. In England the name underwent dissimilation of the sequence -l-l- to -l-r- and the unfamiliar initial vowel was also mutilated, so that eventually the name was considered as no more than a feminine form of Hilary (of which the initial aspirate was in any case variable).
Girl/Female
Bengali, Gujarati, Hindu, Indian, Kannada, Malayalam, Marathi, Sanskrit, Telugu
Sequence
Boy/Male
Indian, Sanskrit
Order; Sequence
Girl/Female
Tamil
Anuloma | அநà¯à®²à¯‹à®®à®¾
Sequence
Anuloma | அநà¯à®²à¯‹à®®à®¾
Surname or Lastname
English
English : from Middle English, Old French convers ‘convert’ (Latin conversus, past participle of convertere ‘to turn’), hence a nickname for a Jew converted to Christianity, or more often an occupational name for someone converted to the religious way of life, a lay member of a convent.
Boy/Male
Indian, Sikh
Music; In-sequence
CONSENSUS SEQUENCE
CONSENSUS SEQUENCE
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CONSENSUS SEQUENCE
CONSENSUS SEQUENCE
CONSENSUS SEQUENCE
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