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Set of overlapping DNA segments that together represent a consensus region of DNA
A contig (from contiguous) is a set of overlapping DNA segments that together represent a consensus region of DNA. In bottom-up sequencing projects, a
Contig
Statistics used in genome assembly
a set of contig or scaffold lengths. The N50 is similar to a mean or median of lengths, but has greater weight given to the longer contigs. It is used
N50, L50, and related statistics
N50,_L50,_and_related_statistics
Defragmentation utility for Windows
Contig is a command line defragmentation utility for Windows developed by Microsoft as part of the Sysinternals Suite. Contig is designed to defragment
Contig (defragmentation utility)
Contig_(defragmentation_utility)
Digital nucleic acid sequence database
technologies often produced assemblies at the contig (short contiguous sequences) or scaffold (ordered sets of contigs) level, with limited chromosomal context
Reference_genome
Field of synthetic biology
constitute the entire genome being synthesized. Note that cassettes differ from contigs by definition, in that these sequences contain regions of homology to other
Synthetic_genomics
Process of locating specific genes
By this approach, physical map contigs can be "anchored" onto a genetic map. The clones used in the physical map contigs can then be sequenced on a local
Gene_mapping
Method used for sequencing random DNA strands
sequences known as contigs. Contigs can be linked together into scaffolds by following connections between mate pairs. The distance between contigs can be inferred
Shotgun_sequencing
Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis". PLOS ONE. 15 (4) e0232402. Bibcode:2020PLoSO
List of sequenced animal genomes
List_of_sequenced_animal_genomes
Bioinformatics technique
assembled into contigs, which, by the nature of their assembly, have gaps between them. The next step is to then bridge the gaps between these contigs to create
Scaffolding_(bioinformatics)
organism 106 Mb 22,285 2011 scaffold N50 = 1.7 Mb Selaginella lepidophylla Lycopodiophyta Desiccation tolerance 122 Mb 27,204 2018 contig N50 = 163 kb
List of sequenced plant genomes
List_of_sequenced_plant_genomes
non-random segregation of sister chromatids, the identification of misoriented contigs in genome assemblies, de novo genome assembly of both haplotypes in diploid
Single-cell DNA template strand sequencing
Single-cell_DNA_template_strand_sequencing
Mutant mouse that eats excessively and becomes profoundly obese
of the gene encoding for the ob protein. Clones were used to construct a contig across most of the 650-kb critical region of ob. Exons from this interval
Ob/ob_mouse
Shrub growing in brackish water
the mangrove virome. Reference sequences are coloured black, and virome contigs are indicated with varied colours. The scale bar represents half amino
Mangrove
Sub-sequence DNA in genetics
tags into EST contigs. Example of resources that provide EST contigs include: TIGR gene indices, Unigene, and STACK Constructing EST contigs is not trivial
Expressed_sequence_tag
Firstly, contigs were generated de novo, secondly, the contigs were ordered and concatenated into supercontigs, and, thirdly, the gaps between contigs were
Hybrid_genome_assembly
RNA family
metagenomic contigs that contain DUF1874 motif examples. This absence could occur because the sequences are truncated in metagenomic contigs, because some
DUF1874_RNA_motif
Data structure for permutations
satisfying the constraint. Applications of PQ trees include creating a contig map from DNA fragments, testing a matrix for the consecutive ones property
PQ_tree
Discipline in genetics
Overlapping reads form contigs; contigs and gaps of known length form scaffolds.
Genomics
create ambiguities in the formation of contigs in genome assembly, while ambiguities in transcriptome assembly contigs usually correspond to spliced isoforms
De novo transcriptome assembly
De_novo_transcriptome_assembly
Algorithm package
extracts the contigs. After running velvetg a number of files are generated. Most importantly, a file of contigs contains the sequences of the contigs longer
Velvet_assembler
Species of bacteria
strain AM401T, contained 1,077 currently identified contigs (sets of overlapping DNA fragments) with an L50 and N50 of 102 and 35,723
Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis
Myxococcus_llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis
Sequencing all the DNA of an individual at once
produced short reads that are pieced together using computer programs to form contigs and joined into assemblies. This technique works poorly for highly repetitive
Whole_genome_sequencing
Species of bacterium
was sequenced by researchers using Illumina technology, resulting in 25 contigs and a total length of about 4.3 megabases. The annotation of the genome
Alkalihalobacillus_clausii
File format for genomic variation data
1 ##reference=file:///seq/references/1000GenomesPilot-NCBI36.fasta ##contig=<ID=20,length=62435964,assembly=B36,md5=f126cdf8a6e0c7f379d618ff66beb2da
Variant_Call_Format
sequence Conserved sequence Constant region Constitutive gene Contig Contig map Contig maps Contiguous genes Continuous variation Controlling element
Index_of_genetics_articles
constitute the entire genome being synthesized. Note that cassettes differ from contigs by definition, in that these sequences contain regions of homology to other
Synthetic_genomes
parameters separately for each disk. Russinovich, Mark (July 4, 2016). "Contig v1.8". Windows Sysinternals. Microsoft. Retrieved June 9, 2011. "Defraggler
Comparison of defragmentation software
Comparison_of_defragmentation_software
Class of thermophilic Asgard archaea
are thermophiles. In the study that established the class, metagenomic contigs assigned to Odinarchaeota were recovered exclusively from hot spring environments
Odinarchaeia
Species of mammal endemic to Hispaniola
effective coverage and adopted a string graph-based assembler, Fermi, for contig construction. This approach proved superior to de Bruijn graph-based assembly
Hispaniolan_solenodon
Chemical transfer pathway between Earth's biological and non-biological parts
Andersson, Anders F.; Quince, Christopher (2014). "Binning metagenomic contigs by coverage and composition". Nature Methods. 11 (11): 1144–1146. doi:10
Biogeochemical_cycle
Hierarchical outline list of articles related to genetics
centromere chromosome chromosomal translocation cloning congenital disorder contig craniosynostosis cystic fibrosis cytogenetic map deletion diabetes mellitus
Outline_of_genetics
Method of DNA sequence reconstruction
select the highest quality and most probable contiguous sequence (contig). Contigs will then be joined together to create a scaffold. The final consensus
Sequence_assembly
aligned to a reference genome or assembled de novo to generate long-range contigs. The read alignment step is important for determining the order and orientation
Linked-read_sequencing
Family of DNA sequences found in prokaryotic organisms
using direct repeat sequences in partially assembled CRISPR arrays from contigs (overlapping DNA segments that together represent a consensus region of
CRISPR
Transmission of a pathogen between different species
contaminants → de novo assembly of the remaining reads → annotation of viral contigs → molecular detection of specific viruses → phylogenetic analysis → interpretation
Cross-species_transmission
De Vriendt E, Van Broeckhoven C, Timmerman V, Beuten J (2000). "A clone contig of 12q24.3 encompassing the distal hereditary motor neuropathy type II gene"
HSPB8
Class of arthropods
earlier genome sequences were produced, they do not meet modern standards (contig N50 > 1 MB). One of the first genomes was presented in 2025, that of Orchesella
Springtail
metagenomics, binning is the computational process of grouping assembled contigs and assigning them to their separate genomes of origin. Binning methods
Binning_(metagenomics)
Species of bacterium
massiliensis, which is about 3.4 Mb, was found to contain 5 scaffolds and 27 contigs greater than 1500 base pairs. G+C nucleotide content comprises 67% of the
Actinomyces_massiliensis
Israeli geneticist
genome mapping in complex cereal genomes in the framework of FP7 consortium (contig assembly algorithms for BAC libraries based on fingerprinting or DNA-DNA
Abraham_B_Korol
Study of genes found in the environment
short reads, they were able to generate 6.58 million contigs greater than 500 bp for a total contig length of 10.3 Gb and a N50 length of 2.2 kb. The study
Metagenomics
Community of microorganisms
recover the sequences of the reads. The reads can then be assembled into contigs. To determine the phylogenetic identity of a sequence, it is compared to
Microbiota
chromosome 15 in contig NW_001493315.1 nucleotides #1085432–1086142 and the originating sequence may be found on bovine chromosome 2 in contig NW_001501789
Composite_transposon
Microsoft website offering diagnostic tools for Windows
of startup applications, RootkitRevealer, a rootkit detection utility, Contig, PageDefrag and a total of 65 other utilities. NTFSDOS, which allowed NTFS
Sysinternals
Protein-coding gene in the species Homo sapiens
high-resolution integrated map spanning the SDHD gene at 11q23: a 1.1-Mb BAC contig, a partial transcript map and 15 new repeat polymorphisms in a tumour-suppressor
HSPB2
American geneticist (1946–2026)
HuRef genome using HUGO gene names, Ensembl, and dbSNP identifiers, HuRef contig or scaffold locations, or NCBI chromosome locations. Users can then browse
J._Craig_Venter
Protein-coding gene in humans
PMID 9695946. S2CID 16499945. Horvat S, Medrano JF (1998). "A 500-kb YAC and BAC contig encompassing the high-growth deletion in mouse chromosome 10 and identification
CRADD
Study of viral material
into overlapping subsequences of a fixed length k (k-mers) known as contigs. Contigs are aligned to reference databases for sequence similarity to assign
Virome_analysis
Protein-coding gene in the species Homo sapiens
S2CID 25320509. Veugelers M, De Cat B, Delande N, et al. (2002). "A 4-Mb BAC/PAC contig and complete genomic structure of the GPC5/GPC6 gene cluster on chromosome
Glypican_5
including a single sequence editor, a multiple sequence alignment editor and a contig editor. MacVector tries to use a minimum of windows and steps to access
MacVector
Genome assembly algorithm
Stage 3: paired assembly graph construction. Stage 4: contig construction. SPAdes outputs contigs and allows to map reads back to their positions in the
SPAdes_(software)
Species of flowering plant
varieties with high yield rates. Predicted genes in homologous primary contigs have been identified as accounting for various traits expressed via variation
Humulus_lupulus
Virus
The presence of contig n6409 sequence was confirmed via Sanger sequencing. This allowed for phylogenetic analysis to position the contig with other dicistroviruses
Linepithema_humile_virus_1
The ACE file format is a specification for storing data about genomic contigs. The original ACE format was developed for use with Consed, a program for
ACE_(genomic_file_format)
Protein-coding gene in humans
Smith CM, Ma NS, Nowak NJ, Shows TB, Gerhard DS (October 1997). "A 3-Mb Contig from D11S987 to MLK3, a Gene-Rich Region in 11q13". Genome Res. 7 (8): 835–42
MAP3K11
Protein-coding gene in humans
EV, Opdenakker G, Gunge N, Sakaki Y, Iio M, Miura R (June 1996). "A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2". Genomics
CCL3L1
File format for sequences and quality scores
reads in each cluster after reordering them or assembling them into longer contigs, achieving perhaps the best trade-off between the running time and compression
FASTQ_format
DR; Myers, RM (March 1996). "Construction of a 750-kb bacterial clone contig and restriction map in the region of human chromosome 21 containing the
End-sequence_profiling
Protein-coding gene in the species Homo sapiens
of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics
Interleukin_37
Method of DNA sequencing developed in 1977
then computer assembled into overlapping or contiguous sequences (termed "contigs") which resemble the full genomic sequence once fully assembled. Sanger
Sanger_sequencing
RNA family
previously by predominantly bioinformatic or experimental methods. The contigs in which Ocean-VII RNAs are quite small. Consequently, it is ambiguous
Ocean-VII_RNA_motif
Species of tree
in 2026. The genome size is approximately 318.6 Mb, with 99.64% of the contig sequences anchored to 14 pseudo-chromosomes. The assembly has a BUSCO completeness
Morus_macroura
Order of viruses
comparative metagenomics. CrAss assumes that a contig(s) made up of reads from differing metagenomes (cross-contig) is representative of a biological entity
CrAssphage
Protein-coding gene in the species Homo sapiens
See CG, Boxer M, Burchell B (September 1994). "Isolation of a human YAC contig encompassing a cluster of UGT2 genes and its regional localization to chromosome
UGT2B4
Mammalian protein found in Homo sapiens
Lench NJ, Telford EA, Andersen SE, et al. (1997). "An EST and STS-based YAC contig map of human chromosome 9q22.3". Genomics. 38 (2): 199–205. doi:10.1006/geno
BAAT
Biological theory
more frequently used results from this model is the expected number of contigs, given the number of fragments sequenced. If one neglects the amount of
DNA_sequencing_theory
Gram-negative bacteria, algae predator
strains. Vc_AZ_1 assembled into 11 contigs totaling 2.78 Mbp via metagenome, with 54.8% GC. Vc_AZ_2 assembled into 38 contigs totaling 2.98 Mbp via Hi-C, with
Vampirovibrio_chlorellavorus
DNA construct
Cox DR, Myers RM (March 1996). "Construction of a 750-kb bacterial clone contig and restriction map in the region of human chromosome 21 containing the
Bacterial artificial chromosome
Bacterial_artificial_chromosome
Protein-coding gene in the species Homo sapiens
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PFKFB1) within a YAC contig in Xp11.21". Genomics. 40 (2): 358–61. doi:10.1006/geno.1996.4530. PMID 9119406
PFKFB1
Species of bacterium
Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2". BMC
Streptomyces_leeuwenhoekii
Protein-coding gene in the species Homo sapiens
region on human chromosome 19: assembly and analysis of a 700-kb cosmid contig spanning the region". Genomics. 23 (3): 659–68. doi:10.1006/geno.1994.1555
PSG4
have clone contigs (an assembled set of overlapping DNA sequences) that cannot be confidently placed on a specific chromosome. Similar contigs are concatenated
GOLGA8H
Any life form too small for the naked human eye to see that lives in a marine environment
metagenomics The discovery process involves marine sampling, DNA sequencing and contig generation. Previously unknown genes, pathways and even whole genomes are
Marine_microorganisms
Method of analysis of genetic material
to produce long stretches of sequences called contigs. Taxonomic identification of the resulting contigs is performed by matching them to the genomes and
Clinical metagenomic sequencing
Clinical_metagenomic_sequencing
Method of species identification using a short section of DNA
producing better quality. The overlapping sequences are then aligned into contigs and merged. Usually, several samples are pooled in one run, and each sample
DNA_barcoding
Linguistic model for phonological analysis
(1995) also propose: I-Contig, violated when a word- or morpheme-internal segment is deleted (from "input-contiguity") O-Contig, violated when a segment
Optimality_theory
Lab technique in cellular biology
to assess the quality of a de novo assembly include median contig length, number of contigs and N50. Genome guided: This approach relies on the same methods
RNA-Seq
extraction (D) cloning and library construction (E) sequencing the clones (F) sequence assembly into contigs and scaffolds
Viral_metagenomics
Method of archaeological study
"PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly". PeerJ. 9 e11845. doi:10.7717/peerj.11845
Ancient_DNA
DNA visualization technique
bacterial genomes. To serve as scaffolds for assembly, assembled sequence contigs can be scanned for restriction sites in silico using known sequence data
Optical_mapping
DNA sequencing method
fragments with overlapping areas, called contigs, and lining them up. If a reference sequence is known, the contigs are then compared to it for variant identification
Illumina_dye_sequencing
Genus of bacteria
with plasmids) or in a draft format (containing multiple unassembled contigs). A new species of Exiguobacterium chiriqhucha has been found to have global
Exiguobacterium
Mammalian protein found in humans
receptors (CCR)-2 and -3. J Immunol. 1996;157:5613–5626 Naruse et al., A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2. Genomics
CCL13
Molecular biology technique
can be freely chosen. Because of this, the tags can be assembled into contigs and the annotation of the tags can be drastically improved. Therefore,
Serial analysis of gene expression
Serial_analysis_of_gene_expression
DNA sequencing
technologies. Longer patterns of methylation are often lost because smaller contigs still need to be assembled. Transcriptomics is the study of the transcriptome
Third-generation_sequencing
Protein-coding gene in the species Homo sapiens
"Systematic sequencing of the human HLA-A/HLA-F region: establishment of a cosmid contig and identification of a new gene cluster within 37 kb of sequence". Genomics
ZNRD1
Protein-coding gene in the species Homo sapiens
locus for autosomal dominant retinitis pigmentosa, construction of a YAC contig and investigation of the candidate gene retinal fascin". Eur J Hum Genet
FSCN2
Protein-coding gene in the species Homo sapiens
JD, Lerman MI (April 1996). "Construction of a 600-kilobase cosmid clone contig and generation of a transcriptional map surrounding the lung cancer tumor
SEMA3B
Protein-coding gene in the species Homo sapiens
A, Siegel-Bartelt J, Northrup H, Elder FF (Sep 1995). "A 4-megabase YAC contig that spans the Langer–Giedion syndrome region on human chromosome 8q24.1:
TRPS1
Mammalian protein found in humans
sequence analysis, tissue expression, and assignment to the CC chemokine gene contig on chromosome 17q11.2". Genomics. 40 (2): 323–31. doi:10.1006/geno.1996
CCL8
Co-localization of genetic loci on a chromosome, or the conservation of gene order
genes and looking for common patterns of collinearity on a chromosomal or contig scale. Homologies are usually determined on the basis of high bit score
Synteny
Mammalian protein found in humans
chemokines. Europ. J. Biochem. 248: 507-515, 1997. Naruse et al. A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2. Genomics
CCL15
Genus of bacteria
related phylogeny. “Levels of DNA sequence similarity of the groEL DNA contig (465 bp) of strain EX-07T were 81.3–82.8 % when compared with the type strains
Jeotgalibaca
Collection of the total genomic DNA from a single organism
sequenced clone. Any new overlapping clones can then be sequenced forming a contig. This technique, called chromosome walking, can be exploited to sequence
Genomic_library
Protein-coding gene in the species Homo sapiens
of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics
Interleukin 36 receptor antagonist
Interleukin_36_receptor_antagonist
scores. Compare Contigs, Phred, Phrap, and Bowtie support. Build separate contigs for hundreds of different clones or a single contig with thousands of
List of sequence alignment software
List_of_sequence_alignment_software
Protein-coding gene in the species Homo sapiens
of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics
IL36B
Genomic analysis technique
Li, Heng (2013). "Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM". arXiv:1303.3997 [q-bio.GN]. Zhang, H.; Song, L.; Wang, X
Hi-C (genomic analysis technique)
Hi-C_(genomic_analysis_technique)
Non-coding RNA in the species Homo sapiens
Kessel A (May 2000). "Construction of a 350-kb sequence-ready 11q13 cosmid contig encompassing the markers D11S4933 and D11S546: mapping of 11 genes and 3
MALAT1
DNA sequence software
sequence assembly and contig editing, aligning cDNA against genomic templates, sequence alignment and editing, alignment of contigs to each other with ClustalW
CodonCode_Aligner
CONTIG
CONTIG
CONTIG
CONTIG
Surname or Lastname
English
English : topographic name for someone who lived by a crabapple tree, Middle English crabbetre (see Crabb 2).
Boy/Male
Hindu
Space
Girl/Female
Bengali, Indian
Gain
Girl/Female
Arabic, Muslim
Fresh; Spectator; Seer
Boy/Male
Indian, Punjabi, Sikh
One who Cherishes the Soul
Girl/Female
Assamese, Hindu, Indian, Kannada, Marathi, Sindhi, Tamil, Telugu
Full Moon
Girl/Female
Gujarati, Hindu, Indian, Sanskrit
Touch; Feel; Sensation
Boy/Male
Hindu
Foreign land or Lord Shiva
Boy/Male
English
Cordmaker. Surname.
Boy/Male
Tamil
CONTIG
CONTIG
CONTIG
CONTIG
CONTIG
n.
The abnormal reception or slipping of a part of a tube, by inversion and descent, within a contiguous part of it; specifically, the reception or slipping of the upper part of the small intestine into the lower; introsusception; invagination.
a.
Contiguous.
v. t.
To dig or cultivate very deeply, usually by digging parallel contiguous trenches in succession, filling each from the next; as, to trench a garden for certain crops.
v. i.
To be contiguous, close, or in contact; to come together; to unite; to mingle; to form a union; as, the hones of the skull join; two rivers join.
v. i.
A placing or being placed in nearness or contiguity, or side by side; as, a juxtaposition of words.
n.
The countries washed by the eastern part of the Mediterranean and its contiguous waters.
n.
A division of a State, embracing several contiguous townships; a county.
n.
The irregular triangular space between the curve of an arch and the inclosing right angle; or the space between the outer moldings of two contiguous arches and a horizontal line above them, or another arch above and inclosing them.
v. i.
To become more or less completely divided, as a body under the action of forces, by the sliding of two contiguous parts relatively to each other in a direction parallel to their plane of contact.
n.
A shake or quaver of the voice in singing, or of the sound of an instrument, produced by the rapid alternation of two contiguous tones of the scale; as, to give a trill on the high C. See Shake.
v. t.
An action, resulting from applied forces, which tends to cause two contiguous parts of a body to slide relatively to each other in a direction parallel to their plane of contact; -- also called shearing stress, and tangential stress.
n.
The quality of weighing less than something else of equal bulk; relative lightness, especially as shown by rising through, or floating upon, a contiguous substance; buoyancy; -- opposed to gravity.
a.
Contiguous; touching.
v. t.
To place in close connection or contiguity; to juxtapose.
n.
The force, or combination of forces, which produces a strain; force exerted in any direction or manner between contiguous bodies, or parts of bodies, and taking specific names according to its direction, or mode of action, as thrust or pressure, pull or tension, shear or tangential stress.
n.
The larger kind of interval between contiguous sounds in the diatonic scale, the smaller being called a semitone as, a whole tone too flat; raise it a tone.
v. i.
To border; to be contiguous; to lie side by side.
v. i.
The intervak between two contiguous degrees of the csale.
a.
Having the nasal bones contiguous.
n.
The state of being contiguous; intimate association; nearness; proximity.