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Set of all RNA molecules in one cell or a population of cells
The transcriptome is the set of all RNA molecules (transcripts) in a cell or a population of cells. It includes all of the functional RNA molecules and
Transcriptome
Transcriptome instability is a genome-wide, pre-mRNA splicing-related characteristic of certain cancers. In general, pre-mRNA splicing is dysregulated
Transcriptome_instability
Study of RNA transcripts
Transcriptomics technologies are the techniques used to study an organism's transcriptome, the sum of all of its RNA transcripts. The information content of an
Transcriptomics_technologies
Lab technique in cellular biology
biological sample, providing a snapshot of the transcriptome at a specific time. It enables transcriptome-wide analysis by sequencing cDNA derived from
RNA-Seq
Analysis technique of genes
Single-cell transcriptomics refers to the quantification and analysis of the transcriptomes of individual cells. Single-cell transcriptomics makes it possible to
Single-cell_transcriptomics
Transcriptome-wide association study (TWAS) is a genetic methodology that can be used to compare the genetic components of gene expression and the genetic
Transcriptome-wide association study
Transcriptome-wide_association_study
De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without the aid of a reference genome. As a result of
De novo transcriptome assembly
De_novo_transcriptome_assembly
American genetics researcher
genomes, transcriptomes, proteomes, and other high-throughput omics datasets. His lab has contributed to understanding the genomes and transcriptomes of yeast
Michael_P._Snyder
Computational methods in biology
biological processes. Single-cell omics technologies has extended beyond the transcriptome to profile diverse physical-chemical properties at single-cell resolution
Single-cell multi-omics integration
Single-cell_multi-omics_integration
Sequences remaining within RNA after RNA splicing
the transcriptome, which is all of the transcribed RNA within a cell type. While the exome is constant from cell-type to cell-type, the transcriptome changes
Exome
Software in bioinformatics
most commonly used in bioinformatic studies to assemble genomes or transcriptomes. Two common types of de novo assemblers are greedy algorithm assemblers
De_novo_sequence_assemblers
Laboratory technique
inhibitors. The addition of RNase inhibitors, such as EGTA, enhances transcriptome analysis by preserving higher quality RNA from the samples. Recording
Patch-sequencing
Order of flowering plants
placement of the Myrtales in the Malvid clade by the One Thousand Plant Transcriptomes Initiative. Myrtales are placed as a sister to the eurosids II clade
Myrtales
Former international research effort
The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants
1000_Plant_Genomes_Project
Measure of the completeness of DNA sequencing
sequencing machine, allowing coverages of >108. Deep sequencing of transcriptomes, also known as RNA-Seq, provides both the sequence and frequency of
Coverage_(genetics)
Digital transcriptome subtraction (DTS) is a bioinformatics method to detect the presence of novel pathogen transcripts through computational removal
Digital transcriptome subtraction
Digital_transcriptome_subtraction
but whose local functions are largely unknown. Tiling arrays aid in transcriptome mapping as well as in discovering sites of DNA/protein interaction (ChIP-chip
Tiling_array
RNA-Seq is a technique that allows transcriptome studies (see also Transcriptomics technologies) based on next-generation sequencing technologies. This
List of RNA-Seq bioinformatics tools
List_of_RNA-Seq_bioinformatics_tools
Swiss-American bioengineer and neuroscientist
S, Lotfy P, Brideau NJ, Oki J, Shokhirev MN, Hsu PD (April 2018). "Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors". Cell. doi:10
Silvana_Konermann
Species of snake
expressed genes. Out of these genes, 12,346 belonged to the venom gland transcriptome, which included 139 genes from 33 toxin gene families. Additionally
Indian_cobra
Molecule for mRNA-capture
A transcriptome in vivo analysis tag (TIVA tag) is a multifunctional, photoactivatable mRNA-capture molecule designed for isolating mRNA from a single
Transcriptome in vivo analysis tag
Transcriptome_in_vivo_analysis_tag
Clade of seed plants that produce flowers
M.; Barker, M.; Carpenter, E.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685
Flowering_plant
Set of proteins that can be expressed by a genome, cell, tissue, or organism
Bioinformatics List of omics topics in biology Plant Proteome Database Transcriptome Interactome Human Proteome Project BioPlex Human Protein Atlas Johnson
Proteome
Species of legume
valuable red "rosewood" timber. University of Oxford published the transcriptomes of Dalbergia oliveri and five other Dalbergia spp. It was found that
Dalbergia_oliveri
DNA sequencing method
strands. It can also be used for whole-genome and region sequencing, transcriptome analysis, metagenomics, small RNA discovery, methylation profiling,
Illumina_dye_sequencing
5′ end of the messenger RNA population in a biological sample (the transcriptome). The small fragments (historically 27 nucleotides long, but now limited
Cap analysis of gene expression
Cap_analysis_of_gene_expression
Species group of the subgenus Drosophila
Mushroom-feeding Drosophila (mycophagous Drosophila) are a subset of Drosophila flies that have highly specific mushroom-breeding ecologies. Often these
Mushroom-feeding_Drosophila
Species of legume
and forest landscape restoration. University of Oxford published the transcriptomes of Dalbergia cochinchinensis and five other Dalbergia spp. It was found
Dalbergia_cochinchinensis
Species of flowering plant
Yang, Chaowei; Zhou, Haijiang; Qiao, Jie (2021). "Full-length SMRT transcriptome sequencing and microsatellite characterization in Paulownia catalpifolia"
Paulownia_catalpifolia
All of the contents of a cell including organelles but excluding the nucleus
and from the nucleus. The study found that CMX compartmentalizes the transcriptome, proteome, and metabolome, and that CMX-associated ribosomes exhibit
Cytoplasm
Species of small, biologically immortal jellyfish
Masaki; Ohara, Osamu; Kubota, Shin (2016-08-01). "De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates". Zoological
Turritopsis_dohrnii
Full-Parasites is a transcriptome database of apicomplexa parasites. apicomplexa Tuda, Josef; Mongan Arthur E; Tolba Mohammed E M; Imada Mihoko; Yamagishi
Full-parasites
Kingdom of organisms
Sagaria in the Ranunculaceae. In 2019, a phylogeny based on genomes and transcriptomes from 1,153 plant species was proposed. The placing of algal groups is
Plant
Study of the structure of plants
conservation and diversification of plant morphologies. In these studies, transcriptome conservation patterns were found to mark crucial ontogenetic transitions
Plant_morphology
Species of single-celled organism
as an example of a protozoan and also as an example of symbiosis. A transcriptome sequence is determined. Moreover, a combination of long-read sequencing
Paramecium_bursaria
Process by which a gene can code for multiple proteins
technology, researchers were able to update the human adenovirus type 2 transcriptome and document the presence of 904 splice variants produced by the virus
Alternative_splicing
Species of plant
traditionally been used as a type of teeth-cleaning twig. The neem genome and transcriptomes from various organs have been sequenced. Expressed sequence tags were
Azadirachta_indica
largest known genome of an RNA virus. It was discovered by inspecting the transcriptomes of the planarian flatworm Schmidtea mediterranea and is the first known
Planarian secretory cell nidovirus
Planarian_secretory_cell_nidovirus
Division of plant life
distantly related red algal hosts. As enlisted in realDB, 27 complete transcriptomes and 10 complete genomes sequences of red algae are available. Listed
Red_algae
Reduction of blood flow to the heart
Coronary artery disease (CAD), also called coronary heart disease (CHD), or ischemic heart disease (IHD), is a type of heart disease involving the reduction
Coronary_artery_disease
Discipline in genetics
Roychowdhury S, Chinnaiyan AM (2016). "Translating cancer genomes and transcriptomes for precision oncology". CA. 66 (1): 75–88. doi:10.3322/caac.21329.
Genomics
Superphylum of bilateral animals
Xenacoelomorpha, and could form the Xenambulacraria group, but recent transcriptome analyses concluded that the phylum Xenacoelomorpha is the sister group
Deuterostome
Type of DNA library
into a collection of host cells, which constitute some portion of the transcriptome of the organism and are stored as a "library." cDNA is produced from
CDNA_library
Species of plant
Sharpe, A. G.; Hughes, T. R.; Page, J. E. (2011). "The draft genome and transcriptome of Cannabis sativa". Genome Biol. 12 (10): R102. doi:10.1186/gb-2011-12-10-r102
Cannabis_indica
Family of beetles
Seidel, Matthias; Eberle, Jonas; Misof, Bernhard; et al. (2023). "A transcriptome-based phylogeny of Scarabaeoidea confirms the sister group relationship
Scarabaeidae
American biotechnology company
D.; Hut, Roelof A.; Panda, Satchidananda (2024-09-03). "Multi-organ transcriptome atlas of a mouse model of relative energy deficiency in sport". Cell
Seer,_Inc.
UniGene was a NCBI database of the transcriptome and thus, despite the name, not primarily a database for genes. Each entry is a set of transcripts that
UniGene
Clade of insects
"The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data". BMC Evolutionary
Aparaglossata
Species of beetle
as CO2) from the atmosphere. Because of its impact on forestry, the transcriptome and the genome of the beetle have been sequenced. It was the second
Mountain_pine_beetle
Species of moth
at the tensan silk genes in more detail a de novo genome and set of transcriptomes have been sequenced, producing a 700Mb reference with 15,481 genes.
Antheraea_yamamai
Lobster or crab organs eaten as a delicacy
the Crab Portunus trituberculatus: Gene Discovery in the Comparative Transcriptome of Different Hepatopancreas Stages Effects of estradiol on fatty acid
Tomalley
Filipino-American statistical geneticist
and mechanisms underlying complex diseases. He was a developer of the transcriptome-wide association study (TWAS) methodology (PrediXcan), which integrates
Eric_R._Gamazon
Order of insects that includes grasshoppers
monophyletic. A recent comprehensive phylogeny based on analyses of data from transcriptomes and mitochondrial genomes found the following relationships within Orthoptera
Orthoptera
Scientific study of chemical processes involving metabolites
correlations between the metabolome and the other cellular ensembles (genome, transcriptome, proteome, and lipidome), which can be used to predict metabolite abundances
Metabolomics
Biological analysis approach
the genome, epigenome, transcriptome, proteome, metabolome, exposome, and microbiome (i.e., a meta-genome and/or meta-transcriptome, depending upon how it
Multiomics
Examines sequence information from individual cells
neuroscience. This platform of single cell RNA sequencing allows to analyze transcriptomes on a cell-by-cell basis by the use of microfluidic partitioning to capture
Single-cell_sequencing
Clade of plants with xylem and phloem
Dickerman, Allan W.; Beers, Eric P. (June 2005). "The Xylem and Phloem Transcriptomes from Secondary Tissues of the Arabidopsis Root-Hypocotyl". Plant Physiology
Vascular_plant
Species of cricket
Brenda; Perkin, Lindsey C.; Lorenzen, Marcé D.; Dossey, Aaron T. (2020). "Transcriptome analysis of life stages of the house cricket, Acheta domesticus, to
House_cricket
Species of fish
capable of tolerating the very high levels of alkalinity in the lake. The transcriptome of the species has been sequenced in order to better understand this
Amur_ide
Species of fish
G.; Duong, Thuy-Yen; Wang, Xu; Dunham, Rex A. (2021). "Comparative Transcriptome Analysis During the Seven Developmental Stages of Channel Catfish (Ictalurus
Iridescent_shark
Type of pluripotent blastocystic stem cell
The transcriptome of embryonic stem cells
Embryonic_stem_cell
Species of plant
(June 2019). "De novo sequencing analysis of the Rosa roxburghii fruit transcriptome reveals putative ascorbate biosynthetic genes and EST-SSR markers".
Rosa_roxburghii
The Human-transcriptome DataBase for Alternative Splicing (H-DBAS) is a database of alternatively spliced human transcripts based on H-Invitational. Alternative
Human-transcriptome DataBase for Alternative Splicing
Human-transcriptome_DataBase_for_Alternative_Splicing
Complete set of small molecules in a biological sample
of proteins (the proteome) and the complete set of transcripts (the transcriptome). The first book on metabolomics was published in 2003. The first journal
Metabolome
Sub-sequence DNA in genetics
species). EST approaches have largely been superseded by whole genome and transcriptome sequencing and metagenome sequencing. An EST results from one-shot sequencing
Expressed_sequence_tag
Burning tobacco and inhaling the smoke
tobacco consumption is rising by 3.4% per year. Smoking alters the transcriptome of the lung parenchyma; the expression levels of a panel of seven genes
Tobacco_smoking
Species of Gram-positive bacterium
competence genes: mapping of the SigH, ComK1 and ComK2 regulons by transcriptome sequencing". Molecular Microbiology. 94 (3): 557–579. doi:10.1111/mmi
Staphylococcus_aureus
Species of mite
weather warms up. Recently, researchers at USDA-ARS published the whole transcriptome of WCM, and showed that WSMV infection alters gene expression of its
Aceria_tosichella
transcriptomics technologies used to gather sequence information on transcriptomes. However the most widely used is RNA-Seq. RNA reads may be obtained
Phylogenetic inference using transcriptomic data
Phylogenetic_inference_using_transcriptomic_data
Species of fox
advantageous genes to overcome extreme cold and starvation periods. Transcriptome sequencing has identified two genes that are under positive selection:
Arctic_fox
American homeopathic company
Traumeel appeared to have a broad ‘phytocellular’ effect on the wound transcriptome by altering the balance of cell types present in the wound. "MediNatura
Heel_(corporation)
G&T-seq (short for single cell genome and transcriptome sequencing) is a novel form of single-cell sequencing technique allowing one to simultaneously
G&T-seq
Species group of the subgenus Drosophila
subgenus Drosophila. A number of species have had their genomes or transcriptomes sequenced for evolutionary studies using Drosophila. The following species
Immigrans-tripunctata radiation
Immigrans-tripunctata_radiation
Species of annelid worm
spines; applying isopropanol to the area may help alleviate the pain. The transcriptome of the bearded fireworm was sequenced and annotated in 2015. de Kluijver
Hermodice_carunculata
Suborder of bats
Koopman to refer to certain families of microbats). Recent studies using transcriptome data have found strong support for the Yinpterochiroptera-Yangochiroptera
Yinpterochiroptera
Hybrid between a sheep and a goat
parent–species combination has an influence on hybrid fertility. Blood transcriptome analysis of a buck–ewe hybrid and its parents revealed significant deviations
Sheep–goat_hybrid
Chemical and systems biology researcher
developed CRISPR-Genome Organization (CRISPR-GO) based on dCas9 and CRISPR-Transcriptome Organization (CRISPR-TO) based on dCas13. Qi is a co-inventor of the
Lei_Stanley_Qi
Classification of eukaryotes
Jackson, Chris; Salomaki, Eric D. (2018). "Phylogenetic analyses of transcriptome data resolve familial assignments for genera of the red-algal
Protist_classification
Subspecies of insect
latest date for the adoption of clothing by humans. However, recent transcriptome analyses casts doubt on whether lice provide a means to date the origin
Body_louse
Species of a cycad genus (plant)
recognized by major databases of plant species. A 2024 study analyzing transcriptomes from 77 species of Zamia found support for a phylogenetic tree of seven
List_of_Zamia_species
RNA sequencing of isolated and/or microdissected cell nuclei
into cDNA after emulsion breakage. Sequencing this cDNA produces the transcriptomes of all the single nuclei being looked at and these can be used for many
SnRNA-seq
Edible annual grass native to Ethiopia and Eritrea
Journal of Botany, 87, 9–17. Cannarozzi, G.; et al. (2014). "Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis
Teff
Mammalian protein found in humans
rise to alternate transcriptional splice variants. ADAR impacts the transcriptome in editing-independent ways, likely by interfering with other RNA-binding
ADAR
Species of flowering plant in the cabbage family
order to improve its potential use as a biofuel crop. For example, the transcriptome of pennycress has been sequenced. NRCS. "Thlaspi arvensis". PLANTS Database
Thlaspi_arvense
Molecular biology technique
The technique has been applied to co-profiling of the epigenome and transcriptome, facilitating investigation of the correlation between accessible peaks
ATAC-seq
End of an organism's life
circulatory system. Masamoto Y, Piraino S, Miglietta MP (December 2019). "Transcriptome Characterization of Reverse Development in Turritopsis dohrnii (Hydrozoa
Death
Genus of deciduous conifers in the family Pinaceae
The genus Cathaya was included in some older studies, but based on transcriptome analysis, is now considered closer to Pinus and Picea. The split of
Larch
American chronobiologist (born 1967)
CA. Hogenesch started work on the human transcriptome and the mRNA characterization of the transcriptomes of humans, mice, and rats, which he would
John_B._Hogenesch
Subspecies of flowering plant
"Candidate chemosensory genes identified in Colaphellus bowringi by antennal transcriptome analysis". BMC Genomics. 16 1028. doi:10.1186/s12864-015-2236-3. PMC 4667470
Napa_cabbage
Suborder of annelids
a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data". Biology. 9 (4): 73. doi:10.3390/biology9040073
Terebelliformia
American evolutionary biologist and botanist
"Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing". Proceedings of the National
Jonathan_F._Wendel
Estimation of embryo quality for in vitro fertilization
can vary in extent from a single target biomarker to entire genomes, transcriptomes, proteomes and metabolomes. The results may be used to score embryos
Embryo_quality
Rose family of flowering plants
recently Xiang et al. (2017) recovered these relationships using nuclear transcriptomes: Rosoideae has been identified as the earliest branching subfamily by
Rosaceae
com. Hansen, KD; Brenner, SE; Dudoit, S (2010). "Biases in Illumina transcriptome sequencing caused by random hexamer priming". Nucleic Acids Res. 38
Random_hexamer
Primary cell of the nervous system
qualities of all neurons: electrophysiology, morphology, and the individual transcriptome of the cells. Besides being universal this classification has the advantage
Neuron
Medical conditions involving the development of the reproductive system
Syndrome Change Conformation of Ligand-Receptor Complex and Altered Transcriptome Profile". Endocrinology. 161 (6) bqaa050. doi:10.1210/endocr/bqaa050
Disorders_of_sex_development
Formation and structure of the placenta
changes in uterine gene expression: a comparative analysis of the uterine transcriptome in viviparous and oviparous lizards". Genome Biol Evol. 8 (10): 3226–3239
Placentation
Family of spiders
phylogenomics: A robust phylogeny of deep theraphosid clades inferred from transcriptome data sheds light on the prickly issue of urticating setae evolution"
Tarantula
Group of eukaryotes considered the closest living relatives of animals
eukaryotic meiotic genes. The transcriptome of Stephanoeca diplocostata was published in 2013. This first transcriptome of a loricate choanoflagellate
Choanoflagellate
Cultivar of kiwifruit
pre-harvest bagging treatment on kiwifruit appearance and quality via transcriptome and metabolome analyses". Food Research International. 173 (Pt 1) 113276
Red_kiwifruit
TRANSCRIPTOME
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Boy/Male
Tamil
Boy/Male
British, English, Scandinavian
Medieval Given Name from Scandinavian Mythology; Water Crossing
Girl/Female
Gujarati, Hindu, Indian
Brilliance; Brightness; Lustre; Sharpness
Boy/Male
German, Italian
Powerful Warrior; Form of Walter
Girl/Female
British, English, German
Powerful Battler
Surname or Lastname
German
German : variant of Vogler.English : variant of Fowler.
Surname or Lastname
English
English : variant of Hudnall.
Boy/Male
American, British, English
From the Stony Hollow
Surname or Lastname
English
English : unexplained.
Girl/Female
Gujarati, Hindu, Indian, Tamil, Telugu
Goddess Parvati
TRANSCRIPTOME
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