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Set of all RNA molecules in one cell or a population of cells
The transcriptome is the set of all RNA molecules (transcripts) in a cell or a population of cells. It includes all of the functional RNA molecules and
Transcriptome
Transcriptome instability is a genome-wide, pre-mRNA splicing-related characteristic of certain cancers. In general, pre-mRNA splicing is dysregulated
Transcriptome_instability
Lab technique in cellular biology
biological sample, providing a snapshot of the transcriptome at a specific time. It enables transcriptome-wide analysis by sequencing cDNA derived from
RNA-Seq
Study of RNA transcripts
Transcriptomics technologies are the techniques used to study an organism's transcriptome, the sum of all of its RNA transcripts. The information content of an
Transcriptomics_technologies
Analysis technique of genes
Single-cell transcriptomics refers to the quantification and analysis of the transcriptomes of individual cells. Single-cell transcriptomics makes it possible to
Single-cell_transcriptomics
De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without the aid of a reference genome. As a result of
De novo transcriptome assembly
De_novo_transcriptome_assembly
Transcriptome-wide association study (TWAS) is a genetic methodology that can be used to compare the genetic components of gene expression and the genetic
Transcriptome-wide association study
Transcriptome-wide_association_study
Software in bioinformatics
most commonly used in bioinformatic studies to assemble genomes or transcriptomes. Two common types of de novo assemblers are greedy algorithm assemblers
De_novo_sequence_assemblers
American genetics researcher
genomes, transcriptomes, proteomes, and other high-throughput omics datasets. His lab has contributed to understanding the genomes and transcriptomes of yeast
Michael_P._Snyder
Digital transcriptome subtraction (DTS) is a bioinformatics method to detect the presence of novel pathogen transcripts through computational removal
Digital transcriptome subtraction
Digital_transcriptome_subtraction
Full-Parasites is a transcriptome database of apicomplexa parasites. apicomplexa Tuda, Josef; Mongan Arthur E; Tolba Mohammed E M; Imada Mihoko; Yamagishi
Full-parasites
Sequences remaining within RNA after RNA splicing
the transcriptome, which is all of the transcribed RNA within a cell type. While the exome is constant from cell-type to cell-type, the transcriptome changes
Exome
RNA-Seq is a technique that allows transcriptome studies (see also Transcriptomics technologies) based on next-generation sequencing technologies. This
List of RNA-Seq bioinformatics tools
List_of_RNA-Seq_bioinformatics_tools
but whose local functions are largely unknown. Tiling arrays aid in transcriptome mapping as well as in discovering sites of DNA/protein interaction (ChIP-chip
Tiling_array
Chemical and systems biology researcher
developed CRISPR-Genome Organization (CRISPR-GO) based on dCas9 and CRISPR-Transcriptome Organization (CRISPR-TO) based on dCas13. Qi is a co-inventor of the
Lei_Stanley_Qi
Computational methods in biology
biological processes. Single-cell omics technologies has extended beyond the transcriptome to profile diverse physical-chemical properties at single-cell resolution
Single-cell multi-omics integration
Single-cell_multi-omics_integration
Molecule for mRNA-capture
A transcriptome in vivo analysis tag (TIVA tag) is a multifunctional, photoactivatable mRNA-capture molecule designed for isolating mRNA from a single
Transcriptome in vivo analysis tag
Transcriptome_in_vivo_analysis_tag
Measure of the completeness of DNA sequencing
sequencing machine, allowing coverages of >108. Deep sequencing of transcriptomes, also known as RNA-Seq, provides both the sequence and frequency of
Coverage_(genetics)
Species of plant in the family Paulowniaceae
Yang, Chaowei; Zhou, Haijiang; Qiao, Jie (2021). "Full-length SMRT transcriptome sequencing and microsatellite characterization in Paulownia catalpifolia"
Paulownia_catalpifolia
Set of proteins that can be expressed by a genome, cell, tissue, or organism
Bioinformatics List of omics topics in biology Plant Proteome Database Transcriptome Interactome Human Proteome Project BioPlex Human Protein Atlas Johnson
Proteome
The Human-transcriptome DataBase for Alternative Splicing (H-DBAS) is a database of alternatively spliced human transcripts based on H-Invitational. Alternative
Human-transcriptome DataBase for Alternative Splicing
Human-transcriptome_DataBase_for_Alternative_Splicing
Former international research effort
The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants
1000_Plant_Genomes_Project
UniGene was a NCBI database of the transcriptome and thus, despite the name, not primarily a database for genes. Each entry is a set of transcripts that
UniGene
Order of flowering plants
placement of the Myrtales in the Malvid clade by the One Thousand Plant Transcriptomes Initiative. Myrtales are placed as a sister to the eurosids II clade
Myrtales
Clade of insects
"The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data". BMC Evolutionary
Aparaglossata
Study of the structure of plants
conservation and diversification of plant morphologies. In these studies, transcriptome conservation patterns were found to mark crucial ontogenetic transitions
Plant_morphology
Species of snake
expressed genes. Out of these genes, 12,346 belonged to the venom gland transcriptome, which included 139 genes from 33 toxin gene families. Additionally
Indian_cobra
DNA sequencing method
strands. It can also be used for whole-genome and region sequencing, transcriptome analysis, metagenomics, small RNA discovery, methylation profiling,
Illumina_dye_sequencing
Swiss-American bioengineer and neuroscientist
S, Lotfy P, Brideau NJ, Oki J, Shokhirev MN, Hsu PD (April 2018). "Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors". Cell. doi:10
Silvana_Konermann
Division of plant life
distantly related red algal hosts. As enlisted in realDB, 27 complete transcriptomes and 10 complete genomes sequences of red algae are available. Listed
Red_algae
Discipline in genetics
Roychowdhury S, Chinnaiyan AM (2016). "Translating cancer genomes and transcriptomes for precision oncology". CA. 66 (1): 75–88. doi:10.3322/caac.21329.
Genomics
Species of single-celled organism
as an example of a protozoan and also as an example of symbiosis. A transcriptome sequence is determined. Moreover, a combination of long-read sequencing
Paramecium_bursaria
Species of legume
and forest landscape restoration. University of Oxford published the transcriptomes of Dalbergia cochinchinensis and five other Dalbergia spp. It was found
Dalbergia_cochinchinensis
Class of parthenogenetic freshwater rotifers
phylogenomic analysis of syndermatan relationships" to date was based on transcriptome data from all four groups, and provided "strong support" for the hypothesis
Bdelloidea
Kingdom of organisms
Sagaria in the Ranunculaceae. In 2019, a phylogeny based on genomes and transcriptomes from 1,153 plant species was proposed. The placing of algal groups is
Plant
Species of bacteria
Single-cell transcriptomics using single-cell RNA-Seq gave the complete transcriptome of H. pylori which was published in 2010. This analysis of its transcription
Helicobacter_pylori
Type of pluripotent blastocystic stem cell
The transcriptome of embryonic stem cells
Embryonic_stem_cell
Cultivar of kiwifruit
pre-harvest bagging treatment on kiwifruit appearance and quality via transcriptome and metabolome analyses". Food Research International. 173 (Pt 1) 113276
Red_kiwifruit
Species of legume
valuable red "rosewood" timber. University of Oxford published the transcriptomes of Dalbergia oliveri and five other Dalbergia spp. It was found that
Dalbergia_oliveri
Clade of seed plants that produce flowers
M.; Barker, M.; Carpenter, E.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685
Flowering_plant
Species of small, biologically immortal jellyfish
Masaki; Ohara, Osamu; Kubota, Shin (2016-08-01). "De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates". Zoological
Turritopsis_dohrnii
Examines sequence information from individual cells
neuroscience. This platform of single cell RNA sequencing allows to analyze transcriptomes on a cell-by-cell basis by the use of microfluidic partitioning to capture
Single-cell_sequencing
Estimation of embryo quality for in vitro fertilization
can vary in extent from a single target biomarker to entire genomes, transcriptomes, proteomes and metabolomes. The results may be used to score embryos
Embryo_quality
Species of flowering plant in the cabbage family
order to improve its potential use as a biofuel crop. For example, the transcriptome of pennycress has been sequenced. NRCS. "Thlaspi arvensis". PLANTS Database
Thlaspi_arvense
Lobster or crab organs eaten as a delicacy
the Crab Portunus trituberculatus: Gene Discovery in the Comparative Transcriptome of Different Hepatopancreas Stages Effects of estradiol on fatty acid
Tomalley
Single cell RNA sequencing method
that allows for the investigation of phenotypes at the level of the transcriptome, to elucidate gene functions in many cells, in a massively parallel
Perturb-seq
Type of DNA library
into a collection of host cells, which constitute some portion of the transcriptome of the organism and are stored as a "library." cDNA is produced from
CDNA_library
End of an organism's life
circulatory system. Masamoto Y, Piraino S, Miglietta MP (December 2019). "Transcriptome Characterization of Reverse Development in Turritopsis dohrnii (Hydrozoa
Death
Scientific study of chemical processes involving metabolites
correlations between the metabolome and the other cellular ensembles (genome, transcriptome, proteome, and lipidome), which can be used to predict metabolite abundances
Metabolomics
Laboratory technique
inhibitors. The addition of RNase inhibitors, such as EGTA, enhances transcriptome analysis by preserving higher quality RNA from the samples. Recording
Patch-sequencing
Biological analysis approach
the genome, epigenome, transcriptome, proteome, metabolome, exposome, and microbiome (i.e., a meta-genome and/or meta-transcriptome, depending upon how it
Multiomics
All of the contents of a cell including organelles but excluding the nucleus
and from the nucleus. The study found that CMX compartmentalizes the transcriptome, proteome, and metabolome, and that CMX-associated ribosomes exhibit
Cytoplasm
Hybrid between a sheep and a goat
parent–species combination has an influence on hybrid fertility. Blood transcriptome analysis of a buck–ewe hybrid and its parents revealed significant deviations
Sheep–goat_hybrid
Clade of archaeplastids including green algae and the land plants
Leebens-Mack, J.H.; et al. (One Thousand Plant Transcriptomes Initiative) (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants"
Viridiplantae
Order of insects that includes grasshoppers
monophyletic. A recent comprehensive phylogeny based on analyses of data from transcriptomes and mitochondrial genomes found the following relationships within Orthoptera
Orthoptera
Species group of the subgenus Drosophila
Mushroom-feeding Drosophila (mycophagous Drosophila) are a subset of Drosophila flies that have highly specific mushroom-breeding ecologies. Often these
Mushroom-feeding_Drosophila
Group of eukaryotes considered the closest living relatives of animals
eukaryotic meiotic genes. The transcriptome of Stephanoeca diplocostata was published in 2013. This first transcriptome of a loricate choanoflagellate
Choanoflagellate
G&T-seq (short for single cell genome and transcriptome sequencing) is a novel form of single-cell sequencing technique allowing one to simultaneously
G&T-seq
largest known genome of an RNA virus. It was discovered by inspecting the transcriptomes of the planarian flatworm Schmidtea mediterranea and is the first known
Planarian secretory cell nidovirus
Planarian_secretory_cell_nidovirus
Filipino-American statistical geneticist
and mechanisms underlying complex diseases. He was a developer of the transcriptome-wide association study (TWAS) methodology (PrediXcan), which integrates
Eric_R._Gamazon
Private crewed spaceflight to the International Space Station in 2025
(Indian Institute of Science) — Survival, revival, reproduction, and transcriptome of the eutardigrade Paramacrobiotus sp. BLR strain in space. Voyager
Axiom_Mission_4
Process by which a gene can code for multiple proteins
technology, researchers were able to update the human adenovirus type 2 transcriptome and document the presence of 904 splice variants produced by the virus
Alternative_splicing
Superphylum of bilateral animals
Xenacoelomorpha, and could form the Xenambulacraria group, but recent transcriptome analyses concluded that the phylum Xenacoelomorpha is the sister group
Deuterostome
American homeopathic company
Traumeel appeared to have a broad ‘phytocellular’ effect on the wound transcriptome by altering the balance of cell types present in the wound. "MediNatura
Heel_(corporation)
Single-stranded DNA virus that infects bacteria
synthesis" approach. In 2020, the transcriptome of ΦX174 was generated. Notable features of the ΦX174 transcriptome is a series of up to four relatively
Phi_X_174
Genus of worms
volucris Mendoza-Franco, Violante-González & Vidal-Martínez, 2008 The transcriptome of Rhabdosynochus viridisi has been studied in 2022, and G-Protein-Coupled-Receptors
Rhabdosynochus
Species of fish
G.; Duong, Thuy-Yen; Wang, Xu; Dunham, Rex A. (2021). "Comparative Transcriptome Analysis During the Seven Developmental Stages of Channel Catfish (Ictalurus
Iridescent_shark
Species of annelid worm
spines; applying isopropanol to the area may help alleviate the pain. The transcriptome of the bearded fireworm was sequenced and annotated in 2015. de Kluijver
Hermodice_carunculata
diverse populations, including people with genetic disorders or cancers Transcriptome analysis is the study of all the RNA transcripts that are produced by
Linked-read_sequencing
Species of plant
Sharpe, A. G.; Hughes, T. R.; Page, J. E. (2011). "The draft genome and transcriptome of Cannabis sativa". Genome Biol. 12 (10): R102. doi:10.1186/gb-2011-12-10-r102
Cannabis_indica
Species group of the subgenus Drosophila
subgenus Drosophila. A number of species have had their genomes or transcriptomes sequenced for evolutionary studies using Drosophila. The following species
Immigrans-tripunctata radiation
Immigrans-tripunctata_radiation
Species of fish
capable of tolerating the very high levels of alkalinity in the lake. The transcriptome of the species has been sequenced in order to better understand this
Amur_ide
transcriptomics technologies used to gather sequence information on transcriptomes. However the most widely used is RNA-Seq. RNA reads may be obtained
Phylogenetic inference using transcriptomic data
Phylogenetic_inference_using_transcriptomic_data
Reduction of blood flow to the heart
Coronary artery disease (CAD), also called coronary heart disease (CHD), or ischemic heart disease (IHD), is a type of heart disease involving the reduction
Coronary_artery_disease
Sub-sequence DNA in genetics
species). EST approaches have largely been superseded by whole genome and transcriptome sequencing and metagenome sequencing. An EST results from one-shot sequencing
Expressed_sequence_tag
Suborder of bats
Koopman to refer to certain families of microbats). Recent studies using transcriptome data have found strong support for the Yinpterochiroptera-Yangochiroptera
Yinpterochiroptera
American biotechnology company
D.; Hut, Roelof A.; Panda, Satchidananda (2024-09-03). "Multi-organ transcriptome atlas of a mouse model of relative energy deficiency in sport". Cell
Seer,_Inc.
5′ end of the messenger RNA population in a biological sample (the transcriptome). The small fragments (historically 27 nucleotides long, but now limited
Cap analysis of gene expression
Cap_analysis_of_gene_expression
Soft-bodied eight-limbed order of molluscs
genome and the mutation rates for the sites are hampered. Hence, greater transcriptome plasticity has come at the cost of slower genome evolution. The genome
Octopus
Species of mite
weather warms up. Recently, researchers at USDA-ARS published the whole transcriptome of WCM, and showed that WSMV infection alters gene expression of its
Aceria_tosichella
Open access DNA sequence database
submission types, including whole genome shotgun (WGS) assemblies, transcriptome shotgun assemblies (TSA), targeted locus studies (TLS), and high-throughput
GenBank
Species of tree
C; Zheng, Y; Zhong, Y; Wu, Y; Li, Z; Xu, LA; Xu, M (24 July 2018). "Transcriptome analysis and identification of genes related to terpenoid biosynthesis
Camphora_officinarum
American biologist
J Moran, et al. Nature Neuroscience 14(4): 459–468 (2011). "Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP
Gene_Yeo
Rose family of flowering plants
recently Xiang et al. (2017) recovered these relationships using nuclear transcriptomes: Rosoideae has been identified as the earliest branching subfamily by
Rosaceae
Species of moth
at the tensan silk genes in more detail a de novo genome and set of transcriptomes have been sequenced, producing a 700Mb reference with 15,481 genes.
Antheraea_yamamai
American bioengineer and molecular biologist
for Biological Studies, where he developed CRISPR-Cas13 systems for transcriptome engineering. In 2020, he joined the bioengineering faculty at the University
Patrick_Hsu
Family of beetles
Seidel, Matthias; Eberle, Jonas; Misof, Bernhard; et al. (2023). "A transcriptome-based phylogeny of Scarabaeoidea confirms the sister group relationship
Scarabaeidae
Complete set of small molecules in a biological sample
of proteins (the proteome) and the complete set of transcripts (the transcriptome). The first book on metabolomics was published in 2003. The first journal
Metabolome
Species of beetle
as CO2) from the atmosphere. Because of its impact on forestry, the transcriptome and the genome of the beetle have been sequenced. It was the second
Mountain_pine_beetle
Species of marine protist
protists with one anterior and one posterior flagellum in each cell. The transcriptome of Mantamonas vickermani is estimated to be 21 megabases long, with
Mantamonas_vickermani
Clade comprising turtles, birds and crocodilians
Schramm, G.; Milinkovitch, M. C. (2011). "Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic
Archelosauria
com. Hansen, KD; Brenner, SE; Dudoit, S (2010). "Biases in Illumina transcriptome sequencing caused by random hexamer priming". Nucleic Acids Res. 38
Random_hexamer
Sequence of DNA that determines traits in an organism
Schaeffer L, Wold B (July 2008). "Mapping and quantifying mammalian transcriptomes by RNA-Seq". Nature Methods. 5 (7): 621–8. doi:10.1038/nmeth.1226. PMC 13303166
Gene
Topics referred to by the same term
from simple molecules in chemistry De novo transcriptome assembly, the method of creating a transcriptome without a reference genome, using de novo sequence
De_novo
Species of cricket
Brenda; Perkin, Lindsey C.; Lorenzen, Marcé D.; Dossey, Aaron T. (2020). "Transcriptome analysis of life stages of the house cricket, Acheta domesticus, to
House_cricket
Clade of eukaryotes containing land plants and some algae
Proterozoic. In 2019, a phylogeny of the Archaeplastida based on genomes and transcriptomes from 1,153 plant species was proposed. The placing of algal groups is
Archaeplastida
Species of plant
(June 2019). "De novo sequencing analysis of the Rosa roxburghii fruit transcriptome reveals putative ascorbate biosynthetic genes and EST-SSR markers".
Rosa_roxburghii
American chronobiologist (born 1967)
CA. Hogenesch started work on the human transcriptome and the mRNA characterization of the transcriptomes of humans, mice, and rats, which he would
John_B._Hogenesch
Species of fox
advantageous genes to overcome extreme cold and starvation periods. Transcriptome sequencing has identified two genes that are under positive selection:
Arctic_fox
RNA family
validated a total of 64 Hfq binding sRNA in Salmonella Typhimurium. A transcriptome wide study on Hfq binding sites in Salmonella mapped 126 Hfq binding
Hfq_binding_sRNA
TRANSCRIPTOME
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TRANSCRIPTOME
Girl/Female
Muslim
Ready for battle
Girl/Female
Biblical
Old friendship.
Boy/Male
Arthurian Legend
A knight.
Boy/Male
Indian, Sanskrit
Intellectual Hegemony
Girl/Female
Hindu, Indian, Kannada, Malayalam, Marathi, Sindhi, Telugu
Well Pleased
Girl/Female
Indian
Divine blessings
Girl/Female
Hindu, Indian
Wise
Girl/Female
Indian, Malayalam
Earth
Boy/Male
Gujarati, Hindu, Indian
The King of Elephant
Boy/Male
Hindu
Bird
TRANSCRIPTOME
TRANSCRIPTOME
TRANSCRIPTOME
TRANSCRIPTOME
TRANSCRIPTOME