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Insertions and deletions in a genome
Indel (insertion-deletion) is a molecular biology term for an insertion or deletion of bases in the genome of an organism. Indels ≥ 50 bases in length
Indel
Megacity and union territory of India
Delhi, officially the National Capital Territory (NCT) of Delhi, is a megacity and a union territory of India containing New Delhi, the capital of India
Delhi
Method for aligning biological sequences
there represents an indel, so add the score for indel: (−1) + (−1) = (−2) The left neighbor also has score −1, represents an indel and also produces (−2)
Needleman–Wunsch_algorithm
Mutation that shifts codon alignment
framing error or a reading frame shift) is a genetic mutation caused by indels (insertions or deletions) of a number of nucleotides in a DNA sequence that
Frameshift_mutation
Shared protein sequence feature
ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved
Conserved_signature_indels
Inhabited locality in Murmansk Oblast, Russia
Indel (Russian: Индель) was a rural locality (an inhabited locality) in Tersky District of Murmansk Oblast, Russia, located beyond the Arctic Circle on
Indel_(rural_locality)
1993 studio album by Vibert / Simmonds
"Path T'Zoar" 13:24 3. "Reservoir" 19:19 4. "(This Can) Robotic" 5:41 5. "Indel Rooks" 11:19 6. "Aple" 4:30 7. "Thing Bounces Back" 12:21 8. "Weirs" 2:00
Weirs_(album)
Phylum of animals having a dorsal nerve cord
chordates, analysis of genome sequences has identified two conserved signature indels (CSIs) in their proteins: cyclophilin-like protein and inner mitochondrial
Chordate
Phylum of worms
presence of 12 clades. In 2019, a study identified one conserved signature indel (CSI) found exclusively in members of the phylum Nematoda through comparative
Nematode
Family of bacteria
discovery of two conserved signature indels which are specific for the order Bifidobacteriales. The first indel, a 1 amino acid deletion in ribosomal
Bifidobacteriaceae
Phylum of Gram-negative bacteria
may have evolved after the divergence of S. ruber. A conserved signature indel has also been identified; this three-amino-acid deletion in ClpB chaperone
Bacteroidota
Method of DNA analysis
from insertions or deletions in the sequence, sometimes referred to as indels. Insertions or deletions can occur due to single mutations, unbalanced crossover
Gap_penalty
substitutions Indels with microhomology at the indel breakpoint junction, indels at polynucleotide-repeat tracts and other complex indels as proportions
HRDetect
Clade of mammals consisting of carnivorans and pholidotes
Montgelard, Claudine; Pardini, Amanda T.; Robinson, Terence J. (2007). "Indel evolution of mammalian introns and the utility of non-coding nuclear markers
Ferae
Clade of birds
Witt, C.C.; Braun, E.L. (2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Telluraves
Subphylum of chordates
weighing some 150 tonnes. Molecular markers known as conserved signature indels in protein sequences have been identified and provide distinguishing criteria
Vertebrate
Defect in the structure of the heart that is present at birth
insertion/deletion (indel) 3–5% Holt–Oram syndrome, Noonan syndrome, Alagille syndrome Gene panel De novo protein-coding SNV or indel ~10% Mutations in
Congenital_heart_defect
File format for genomic variation data
without white-space. 4 REF The reference base (or bases in the case of an indel) at the given position on the given reference sequence. 5 ALT The list of
Variant_Call_Format
Bacteria that give a positive result in the Gram stain test
between the monoderm and diderm bacteria is supported by conserved signature indels in a number of important proteins (viz. DnaK, GroEL). Of these two structurally
Gram-positive_bacteria
scientists now believe that there is approximately a 3% divergence due to indels on top of the originally believed 1%. Additionally, gene duplication and
The_Myth_of_the_One_Percent
Complete set of nucleic acid sequences for humans
order of 0.1% due to single-nucleotide variants and 0.6% when considering indels), these are considerably smaller than the differences between humans and
Human_genome
Indigenous community South Asia
their Lion god, Bhairav dev is their dog god. Some of their other gods are Indel dev, Bada dev, Mahadevel, Tejaji, Lotha mai, Techma, Orka Chichma and Kajal
Bhil
Genetic mutation not inherited from a parent
typically occurs within the germline, or early in embryonic development. Indels are genetic mutations which consist of two categories, insertions and deletions
De_novo_mutation
Nepalese ethnic group
Sherpa highlanders on the Tibetan Plateau inferred from high-resolution InDel panel and genome-wide SNPS". Forensic Science International: Genetics. 56
Sherpa_people
Order of egg-laying mammals
van Rheede, Teun (2005). "The platypus is in its place: Nuclear genes and indels confirm the sister group relation of monotremes and therians". Molecular
Monotreme
Capital and largest city of Amazonas, Brazil
2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Manaus
next generation paired-end sequencing data, providing a list of candidate indels with quality scores. SOAPsnp is a consensus sequence builder. This tool
Short Oligonucleotide Analysis Package
Short_Oligonucleotide_Analysis_Package
Infraclass of mammals in the clade Metatheria
Madsen O (March 2006). "The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians". Molecular
Marsupial
Clade of birds
Nitish; Minjares, Uriel; Mirarab, Siavash (2019). "Phylogenetic Signal of Indels and the Neoavian Radiation". Diversity. 11 (7): 108. doi:10.3390/d11070108
Neoaves
Rare genetic disorder
receptors). KCNQ2 encephalopathy is caused by heterozygous missense or in-frame indel mutations shown to have a dominant negative (DN; >50% reduction of the M-current
KCNQ2 developmental and epileptic encephalopathy
KCNQ2_developmental_and_epileptic_encephalopathy
Overview of the genome of Apples
MdMYB1, 15 SNPs and five indels were identified. These indels were very different between the two types of apples. One of these indels is an LTR retrotransposon
Apple_genome
Paraphyletic group of birds
Christopher; Braun, Edward (13 March 2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Bird_of_prey
File format for sequence data
to a reference sequence. This format facilitates visual display of SNP/indel calling and alignment. It was first used by Tony Cox and Zemin Ning at the
Pileup_format
State of Brazil
2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
São_Paulo_(state)
Medical condition
VHL disease is caused by the truncation of pVHL by nonsense mutations, indel mutations or splice site mutations. The VHL protein (pVHL) is involved in
Von_Hippel–Lindau_disease
"Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels". PNAS. 99 (21): 13633–35. Bibcode:2002PNAS...9913633B. doi:10.1073/pnas
Timeline_of_human_evolution
Species of plant in the Rutaceae family
Luis; Ollitrault, Patrick (2011). "A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the 'true citrus
Trifoliate_orange
American geneticist (1946–2026)
single-nucleotide polymorphisms (SNPs), block substitutions, short and large indels, and structural variations like insertions, deletions, inversions, and copy
J._Craig_Venter
Genus of bacteria
five conserved signature indels in important proteins, which are uniquely found in members of the genus Rickettsia. These indels consist of a four-amino-acid
Rickettsia
Clade of birds
3897/vertebrate-zoology.71.e61728. Yuri, T (2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Austrodyptornithes
Phylum of bacteria
and Borreliaceae. Molecular markers in the form of conserved signature indels (CSIs) and CSPs have been found specific for each of the orders, with the
Spirochaete
Section of plants in genus Saxifraga
(indels) in its DNA sequence aligns this section closely with other Saxifraga sections, such as Mesogyne, Porphyrion, and Cymbalaria. Notably, indel VII
Saxifraga_sect._Cotylea
Clade of marsupials and close relatives
W.; Madsen, O. (2006). "The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and therians". Molecular
Metatheria
Biomedical research aid platform
Afshar, Pegah T.; Gross, Sam S. (November 2018). "A universal SNP and small-indel variant caller using deep neural networks". Nature Biotechnology. 36 (10):
PrecisionFDA
Genus of bacteria
sequences. This clade is also strongly supported by a conserved signature indel consisting of a three-amino-acid insertion in isoleucine tRNA synthetase
Actinomyces
Domain of organisms
archaeal genomes has also identified several molecular conserved signature indels and signature proteins uniquely present in either all archaea or different
Archaea
Class of bacteria
the sequenced genomes have revealed many conserved insertion-deletions (indels) in widely distributed proteins and whole proteins (i.e. signature proteins)
Alphaproteobacteria
Protein-coding gene in the species Homo sapiens
two isoform constructs known for MEGF8, which differ by a 67 amino acid indel. The isoform 2 splice version (analyzed throughout this page) is 2785 amino
Multiple epidermal growth factor-like domains 8
Multiple_epidermal_growth_factor-like_domains_8
used to detect single base mismatches or small insertions or deletions (indels). Surveyor nuclease is part of a family of mismatch-specific endonucleases
Surveyor_nuclease_assay
State of Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Pernambuco
Proposed superphylum of bacteria
members are considered to form a clade due to a number of conserved signature indels. Cavalier-Smith calls the equivalent grouping a phylum by the name of Sphingobacteria
FCB_superphylum
Genus of bacteria
indels which are uniquely found in members of the phylum Chlorobiota (formerly Chlorobi) and are thus characteristic of the phylum. The first indel is
Chlorobium
Genus of bacteria
well as all other bacteria by the presence of eight conserved signature indels found in proteins such as adenylate kinase and replicative DNA helicase
Thermus
Clade of birds
ISSN 2053-7166. Yuri, T.; et al. (2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Coraciimorphae
Sequence analysis in social science
a D e l ) {\displaystyle c(a^{\rm {Ins}})=c(a^{\rm {Del}})} ; the term indel cost usually refers to the common cost of insertion and deletion. Considering
Optimal_matching
specific tumor. Different types of mutations (e.g. single nucleotide variants, indels, structural variants) can be used individually or in combination to model
Mutational_signatures
Region in Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Northeast_Region,_Brazil
Group of bacteria that do not retain the Gram stain used in bacterial differentiation
Acidobacteriota) are uniquely identified by a few conserved signature indel (CSI) in the HSP60 (GroEL) protein. The presence of this CSI in all sequenced
Gram-negative_bacteria
Order of bacteria
conserved signature indels have been identified which, along with the proteins, serve as molecular markers for the order. The indels are a three-amino-acid
Campylobacterales
Genus of bacteria
corynebacterial genomes has led to the identification of several conserved signature indels (CSIs) that are unique to the genus. Two examples of CSIs are a two-amino-acid
Corynebacterium
Root of a phylogenetic tree
Van Rheede, Teun (2005). "The Platypus Is in Its Place: Nuclear Genes and Indels Confirm the Sister Group Relation of Monotremes and Therians". Molecular
Basal_(phylogenetics)
Set of genetic variations in populations
the variome can be the sum of the single nucleotide polymorphisms (SNPs), indels, and structural variation (SV) of a population or species. The Human Variome
Variome
Order of bacteria
from other Gammaproteobacteria by the presence of four conserved signature indels (CSIs) in the proteins tRNA-guanine(34) transglycosylase, lipoprotein-releasing
Legionellales
State of Brazil
2015. Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels "Estimativas da população residente nos municípios brasileiros com data
Mato_Grosso_do_Sul
State of Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Paraná_(state)
Species of flightless bird
William; Reddy, Sushma (13 March 2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Common_ostrich
Taxon of birds
Chojnowski, J.L.; et al. (13 March 2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Passerea
Botanical classification of the genus Citrus
Luis; Ollitrault, Patrick (2011). "A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the 'true citrus
Citrus_taxonomy
State of Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Amazonas_(Brazilian_state)
Release of milk from the mammary glands
Madsen O (March 2006). "The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians". Molecular
Lactation
Technique used to identify individuals via DNA characteristics
undetectable by this area, so some kits also add up to 4 Y-chromosomal indels and STRs. Y chromosomal STRs are used in much of the same way as the autosomal
DNA_profiling
Genus of bacteria
conventional, expensive, metal remediation technologies. Two conserved signature indels (CSIs) have been identified through genomic analysis as exclusive for this
Priestia
Order of birds
2008-10-30. Yuri, T. et al. (2013) Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals
Bucerotiformes
Mammalian protein found in Homo sapiens
Individuals with disruptive mutations (defined as nonsense, splice site, or indel frameshift) in LDLR have an average LDL-cholesterol of 279 mg/dL, compared
LDL_receptor
Group of mammals comprising horses, bats, carnivores, and pangolins, among others
Montgelard, Claudine; Pardini, Amanda T.; Robinson, Terence J. (2007). "Indel evolution of mammalian introns and the utility of non-coding nuclear markers
Pegasoferae
Clade of birds
Rebecca; Harshman, John; et al. (2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Eurypygimorphae
Latin Americans of European or West Asian descent
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
White_Latin_Americans
State of Brazil
2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Rio_Grande_do_Sul
2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Demographics_of_Brazil
Clade of birds
William; Reddy, Sushma (13 March 2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Strisores
Family of birds
Nitish; Minjares, Uriel; Mirarab, Siavash (2019). "Phylogenetic Signal of Indels and the Neoavian Radiation". Diversity. 11 (7): 108. Bibcode:2019Diver.
Columbidae
Succession of nucleotides in a nucleic acid
interpreted as point mutations and gaps as insertion or deletion mutations (indels) introduced in one or both lineages in the time since they diverged from
Nucleic_acid_sequence
Occurrence in an interbreeding population of two or more discontinuous genotypes
most common form of genetic variation. Small-scale insertions/deletions (Indels) consist of insertions or deletions of bases in DNA. Polymorphic repetitive
Gene_polymorphism
Infraclass of birds
ISSN 2053-7166. Yuri, T. (2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Palaeognathae
People of Mexico
(December 2017). "Genetic diversity of Mexican-Mestizo populations using 114 INDEL polymorphisms". Forensic Science International: Genetics Supplement Series
Mexicans
Difference in DNA among individuals or populations
sequence variation (<1 kilobase, kb) includes base-pair substitution and indels. Large-scale structural variation (>1 kb) can be either copy number variation
Genetic_variation
Highly polymorphic DNA region
simply low selective pressure allowing a great number of substitutions and indels (as in the case of mitochondrial DNA D-loop and 16S rRNA). In the case of
Hypervariable_region
Genus of rod-shaped bacteria
but optimal growth occurs in the range of 25-37°C. 11 conserved signature indels (CSIs) have been identified through genomic analysis as exclusive for Neobacillus
Neobacillus
in any natural, unmanipulated setting. Contrast ex vivo and in vitro. indel A term referring to either an insertion or a deletion of one or more bases
Glossary of cellular and molecular biology (0–L)
Glossary_of_cellular_and_molecular_biology_(0–L)
Order of archaea
of eight conserved signature proteins (CSPs) and two conserved signature indels (CSIs) present in the ribosomal operon protein and small GTP-binding protein
Natrialbales
Genus of bacteria
genus occurs in the range of 25–37 °C (77–99 °F). Four conserved signature indels (CSIs) have been identified through genome sequence analysis as specific
Lederbergia
Chinese-speaking ethnoreligious group
between Ningxia Hui and eastern Asian populations revealed by a set of InDel loci". Royal Society Open Science. 7 (1) 190358. Bibcode:2020RSOS....790358Z
Hui_people
State in Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Minas_Gerais
Genus of bacteria
highly specific molecular signatures (in the form of conserved signature indels) that are exclusively shared by the entire genus or its distinct subclades
Streptococcus
Enzymes that differ in amino acid sequence but catalyze the same chemical reaction
Allozymes may result from point mutations or from insertion-deletion (indel) events that affect the coding sequence of the gene. As with any other new
Isozyme
Mutation that removes a part of a DNA sequence
recombination is a step in the formation of mitochondrial DNA deletions. Indel Chromosome abnormalities Null allele List of genetic disorders Medical genetics
Deletion_(genetics)
Gene-editing technology
function edits, but also DNA Codon changes, Single-nucleotide polymorphism, Indels, and other types of genetic changes to be introduced and tracked. By improving
MAGESTIC
Genus of bacteria
of butanol. Genomic analyses have identified three conserved signature indels (CSIs) in the proteins HAMP domain-containing protein,
Peribacillus
Birds from the order Strigiformes
Nitish; Minjares, Uriel; Mirarab, Siavash (2019). "Phylogenetic Signal of Indels and the Neoavian Radiation". Diversity. 11 (7): 108. Bibcode:2019Diver.
Owl
Family of bacteria
sequence analyses. Molecular markers, specifically conserved signature indels, specific to this family were identified as evidence supporting the division
Enterobacteriaceae
INDEL
INDEL
INDEL
Girl/Female
Tamil
Srinisha | à®·à¯à®°à¯€à®¨à¯€à®·à®¾Â
Beauty
Boy/Male
Celtic
Regal.
Boy/Male
Indian
Tongue, Language, Defender of mankind
Girl/Female
Muslim
Equal, Rival
Girl/Female
Latin
Amazon.
Boy/Male
American, British, English
Spear-man
Boy/Male
Indian, Sanskrit
Bearer of the Flute
Girl/Female
Indian
Tune
Boy/Male
Biblical
It is requiring or beseeching.
Girl/Female
Hindu
Name of a Raga
INDEL
INDEL
INDEL
INDEL
INDEL
n.
An indelible mark or figure made by puncturing the skin and introducing some pigment into the punctures; -- a mode of ornamentation practiced by various barbarous races, both in ancient and modern times, and also by some among civilized nations, especially by sailors.
superl.
Cross; coarse; indelicate; as, a broad compliment; a broad joke; broad humor.
pl.
of Indelicacy
a.
Not delectable; unpleasant; disagreeable.
n.
A want of niceness; indelicacy; impropriety.
v. t.
To fix indelibly or permanently, as in the mind or memory; to impress.
n.
The quality of being indelible.
superl.
Gross; indelicate; indecent.
adv.
In a gross or indelicate manner.
v. t.
To mark or impress indelibly, as with a hot iron.
a.
Indeliberate.
a.
Not modest; wanting in the reserve or restraint which decorum and decency require; indecent; indelicate; obscene; lewd; as, immodest persons, behavior, words, pictures, etc.
n.
The quality of being indelicate; want of delicacy, or of a nice sense of, or regard for, purity, propriety, or refinement in manners, language, etc.; rudeness; coarseness; also, that which is offensive to refined taste or purity of mind.
a.
That can not be annulled; indestructible.
n.
To impress deeply (on the mind); to fix indelibly.
a.
Incapable of being effaced; indelible; ineradicable.
a.
That can not be removed, washed away, blotted out, or effaced; incapable of being canceled, lost, or forgotten; as, indelible characters; an indelible stain; an indelible impression on the memory.
superl.
Characterized by obcenity; indecent; indelicate; gross; filthy.
a.
Not delicate; wanting delicacy; offensive to good manners, or to purity of mind; coarse; rude; as, an indelicate word or suggestion; indelicate behavior.
a.
Done without deliberation; unpremeditated.