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Set of computational techniques
Cellular deconvolution (also referred to as cell type composition or cell proportion estimation) refers to computational techniques aiming at estimating
Cellular_deconvolution
Parallel computing paradigm
for Deconvolution", Int’l Workshop on Cellular Neural Networks and Their Applications, 2006 P. Venetianer and T. Roska, "Image Compression by Cellular Neural
Cellular_neural_network
Alternatively, the gene expression profile may be analyzed by cellular deconvolution algorithms to infer the composition of cell types. Zhang, Jitao
Tissue_heterogeneity
Chemical compound
Médard, Guillaume; Kuster, Bernhard (2023). "Chemoproteomic target deconvolution reveals Histone Deacetylases as targets of (R)-lipoic acid". Nature
Lipoic_acid
Type of medical testing in drug discovery
be followed up with identification (sometimes referred to as target deconvolution) and validation, often through the use of chemoproteomics, to identify
Phenotypic_screening
Protein-coding gene in the species Homo sapiens
2019). "RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types". Cell Reports. 26 (6): 1627–1640.e7. doi:10
PIEZO1
Transmembrane Protein 144
2019). "RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types". Cell Reports. 26 (6): 1627–1640.e7. doi:10
TMEM144
zeros). Instead, an iterative algorithm called constrained iterative deconvolution in the spatial domain is much more practical here: △ ( k + 1 ) ←
Light_field_microscopy
Chemotherapy medication
on electron crystallographic density and nuclear magnetic resonance deconvolution has been proposed to explain the binding of docetaxel to β-tubulin.
Docetaxel
Microscope observing a thin depth of a cell
by deconvoluting the signal and subtracting the known artifact. The deconvolution technique is simply using an inverse fourier transform to obtain the
Total internal reflection fluorescence microscope
Total_internal_reflection_fluorescence_microscope
Large-scale study of proteins
concentrations, or time points. This approach facilitates high-content target deconvolution and comparative mechanism-of-action profiling, including applications
Proteomics
Study of living cells using time-lapse microscopy
resolution by using a quasi-2π-holographic detection scheme and complex deconvolution. The spatial frequencies of the imaged cell do not make any sense to
Live-cell_imaging
Imaging of focal planes within a thick sample
sectioning of normal wide field microscopes can be improved significantly by deconvolution, an image processing technique to remove blur from the image according
Optical_sectioning
Optical microscope that uses fluorescence and phosphorescence
filaments. The image was taken on a confocal microscope, and the subsequent deconvolution was done using an experimentally derived point spread function. Epifluorescent
Fluorescence_microscope
Series of techniques in optical microscopy
microscopy with closed pinhole or aided by computational methods such as deconvolution or detector-based pixel reassignment (e.g. re-scan microscopy, pixel
Super-resolution_microscopy
Molecular biology technique
clinical research and disease studies. EPIC-ATAC has been developed as a deconvolution framework to quantify cell-type heterogeneity in bulk tumor ATAC-seq
ATAC-seq
Lab technique in cellular biology
alteration, microbial contamination, transposable elements, cell type (deconvolution) and the presence of neoantigens. Prior to RNA-Seq, gene expression
RNA-Seq
Single cell RNA sequencing method
processing are performed to map quality reads to a reference genome. Deconvolution of cell barcodes, guide barcodes and UMIs enables the association of
Perturb-seq
American computational neuroscientist
of calcium imaging data. She helped to elucidate that non-negative deconvolution (NND) was the best approach when inferring spike times from calcium
Carsen_Stringer
Spherical particle larger than nano particles but smaller than sand particles
ball bearing" texture during application (Polyethylene Microspheres) Deconvolution - Small fluorescent microspheres (<200 nanometers) are required to obtain
Microparticle
Observation of the diversity of tumour cells
cells can show distinct morphological and phenotypic profiles, including cellular morphology, gene expression, metabolism, motility, proliferation, and metastatic
Tumour_heterogeneity
American scientist
tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm". Nature Protocols. 10 (2): 316–333. doi:10.1038/nprot.2015
Smita_Krishnaswamy
Technology for screening small molecule compounds
including the method of synthesis of combinatorial libraries and that of a deconvolution strategy in a document notarized in the same year. Motivations that
DNA-encoded_chemical_library
Chemical stimulant produced by some plants
Calvino-Martin F, Kuczaj AK, Wong ET, Titz B, Xiang Y, et al. (January 2023). "Deconvolution of Systemic Pharmacokinetics Predicts Inhaled Aerosol Dosimetry of Nicotine"
Nicotine
Species of bacterium
Treponema pallidum Outer Membrane Protein Repertoire: a Road Map for Deconvolution of Syphilis Pathogenesis and Development of a Syphilis Vaccine". Journal
Treponema_pallidum
processing and widefield pseudo-stacks will often benefit from digital deconvolution to remove the out-of-focus light. The advent of automated microscopes
Bioimage_informatics
pre-processing prior to quantification. Careful image restoration by deconvolution removes noise and increases contrast in images, improving the quality
Colocalization
American biologist (born 1945)
Kirschner, MW (April 1, 2014). "Exploiting polypharmacology for drug target deconvolution". Proc. Natl. Acad. Sci. U.S.A. 111 (13): 5048–53. Bibcode:2014PNAS
Marc_Kirschner
Bivariate von Mises distribution Black–Scholes Bland–Altman plot Blind deconvolution Blind experiment Block design Blocking (statistics) Blumenthal's zero–one
List_of_statistics_articles
Method of analyzing transmission electron microscopy imagery
complex responsible for building the long chain fatty acids essential for cellular life. Resolved to 5.9 Å in 2010. Cyro-EM allows the scientists to observe
Single_particle_analysis
Protein-coding gene in humans
GF, Meijer L, Rachidi N (May 2016). "From Drug Screening to Target Deconvolution: a Target-Based Drug Discovery Pipeline Using Leishmania Casein Kinase
CSNK1D
present in the expression are uniquely determined by deconvolution equations, but deconvolution is ill-conditioned, so authors use block-sparsity to give
Super-resolution photoacoustic imaging
Super-resolution_photoacoustic_imaging
development of statistical methods are based on stochastic models, a possible deconvolution procedure applied to the trajectories. Numerical simulations could also
Single-particle_trajectory
Type of transmissive optical device
through a deconvolution post-processing method. However, the physical implementation has shown to be more effective than the deconvolution. Physical construction
Superlens
Statistical method for studying cancer cells
Theory. Elsevier. ISBN 978-0-444-59933-9. Ahn, Jaeil, et al. “DeMix: Deconvolution for Mixed Cancer Transcriptomes Using Raw Measured Data.” Bioinformatics
DeMix
British medical researcher
Mixture Quantile dilation (BMIQ) algorithm and the EpiDISH cell-type deconvolution framework. Alongside colleagues, he is also a co-developer of the integrated
Andrew_Teschendorff
Computational methods in biology
scRNAseq can help overcome these limitations by supporting the spatial deconvolution of low-resolution readouts and estimating the frequencies of each cell
Single-cell multi-omics integration
Single-cell_multi-omics_integration
Medical model that tailors medical practices to the individual patient
PMID 30104762. Marnetto D, Pärna K, Läll K, et al. (April 2020). "Ancestry deconvolution and partial polygenic score can improve susceptibility predictions in
Personalized_medicine
Techniques used to study protein–small molecule interactions
owing to the lack of functional readouts, which would otherwise require deconvolution of the source compound that generates biological activity. Thus, the
Chemoproteomics
Biological process
methylated regions (DMRSs), potentially enhancing its sensitivity. Signal deconvolution algorithms based on DNA methylation have been successfully applied to
DNA_methylation
Protein-coding gene in the species Homo sapiens
syndecan-4 and its regulatory kinases in costameres of rat cardiomyocytes: a deconvolution microscopic study". The Anatomical Record. 268 (1): 38–46. doi:10.1002/ar
PRKCE
L, Liu C, Quintero A, Wu L, Yuan Y, Wang M, et al. (January 2019). "Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity"
List of single cell omics methods
List_of_single_cell_omics_methods
Probabilities to Identify Peptides from Tandem Mass Spectra". Molecular & Cellular Proteomics. 6 (9): 1638–1655. doi:10.1074/mcp.T600050-MCP200. ISSN 1535-9476
List of mass spectrometry software
List_of_mass_spectrometry_software
Pharmaceutical discovery procedure
hits from these screens is unknown and may require extensive target deconvolution experiments to ascertain. The growth of the field of chemoproteomics
Drug_discovery
Chemical compound
Wehland et al. also notes that at higher concentrations, phalloidin induces cellular contraction. Soon after its discovery, scientists injected phalloidin into
Phalloidin
et al. developed a novel super-resolution technique through sparse deconvolution of polarization-modulated fluorescent images (SPoD). Because the fluorescent
Super-resolution dipole orientation mapping
Super-resolution_dipole_orientation_mapping
American engineering educator
papers in the areas of digital signal processing, pattern recognition, deconvolution, along with biomedical engineering. He also served as president of the
Bruce_Eisenstein
Study of RNA transcripts
their original 11 bp tags using computer software in a process called deconvolution. If a high-quality reference genome is available, these tags may be
Transcriptomics_technologies
Use of DNA methylation patterns to predict phenotypes
M.; Salas, Lucas A.; Christensen, Brock C. (2017-07-19). "Cell-type deconvolution from DNA methylation: a review of recent applications". Human Molecular
Epiphenotyping
tool to facilitate genome assembly. DeconRNASeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. FastQ Screen screens
List of RNA-Seq bioinformatics tools
List_of_RNA-Seq_bioinformatics_tools
Software platform for 3D and 4D data visualization
thousands.[citation needed] Specific readers for microscopy data Image deconvolution Exploration of 3D imagery obtained from virtually any microscope Extraction
Amira_(software)
MRI procedure that measures brain activity by detecting associated changes in blood flow
next. To address these challenges, researchers employ techniques like deconvolution, which mathematically separates the overlapping BOLD responses. In 2023
Functional magnetic resonance imaging
Functional_magnetic_resonance_imaging
Medical imaging technique
S2CID 154537213. Liberati, D.; Turkheimer, F. (1999). "Linear spectral deconvolution of catabolic plasma concentration decay in dialysis". Medical & Biological
PET_for_bone_imaging
software that implements a Hierarchical Bayes statistical model to estimate cellular frequency patterns of mutations in a population of cancer cells using observed
PyClone
Measuring versus elapsed time the net rate of heat flow
the systematic study of the unique chemical fingerprints that specific cellular processes leave behind; i.e. the study of their small-molecule metabolite
Isothermal_microcalorimetry
Interdisciplinary field
orientation density function from diffusion-weighted MRI data using spherical deconvolution". NeuroImage. 23 (3): 1176–1185. doi:10.1016/j.neuroimage.2004.07.037
Medical_image_computing
Princeton University Imaging Physics Group Microfluidic Tomography, Deconvolution, Superresolution United States University of Missouri Nicole Hashemi
List of optofluidics researchers
List_of_optofluidics_researchers
CELLULAR DECONVOLUTION
CELLULAR DECONVOLUTION
Surname or Lastname
English
English : patronymic from Butter 1.English : occupational name for a servant working in a wine cellar, Norman French boterie (see Buttery), with the Middle English genitive -s.German : variant of Butter 2.
Girl/Female
Latin
Beautiful.
Surname or Lastname
German
German : from Middle High German kellaere ‘cellarman’, ‘cellar master’ (Latin cellarius, denoting the keeper of the cella ‘store chamber’, ‘pantry’). Hence an occupational name for the overseer of the stores, accounts, or household in general in, for example, a monastery or castle. Kellers were important as trusted stewards in a great household, and in some cases were promoted to ministerial rank. The surname is widespread throughout central Europe.English : either an occupational name for a maker of caps or cauls, from Middle English kellere, or an occupational name for an executioner, from Old English cwellere.Irish : reduced form of Kelleher.Scottish : variant of Keillor.
Surname or Lastname
English (mainly East Anglia)
English (mainly East Anglia) : habitational name from Lyng in Norfolk, so named from Old English hlinc ‘hillside’, or from either of two places in Norfolk and Lincolnshire named Ling, from Old Norse lyng ‘ling’, ‘heather’. There is also a Lyng in Somerset, so named from Old English lengen ‘long place’.German : variant of Link.Chinese : from a word meaning ‘ice’. In ancient times, the imperial palace was able to enjoy ice in the summer by storing winter ice in a cellar, entrusting its care to an official called the iceman. This post was once filled during the Zhou dynasty (1122–221 bc) by a descendant of Kang Shu, the eighth son of Wen Wang, who had been granted the state of Wei soon after the establishment of the Zhou dynasty. Descendants of this particular iceman adopted the word for ice, ling, as their surname.
CELLULAR DECONVOLUTION
CELLULAR DECONVOLUTION
Girl/Female
Indian
New Year
Girl/Female
Arabic, Muslim
A Star
Boy/Male
Hindu, Indian, Marathi
An Angel
Boy/Male
Muslim
Kind of tree
Boy/Male
Muslim/Islamic
Rashness
Boy/Male
Tamil
Tamilmaran | தாமீலà¯à®®à®°à®£Â
Boy/Male
Arabic, Muslim
Of Good Fortune; Fortunate
Surname or Lastname
English
English : apparently a variant of Trivett.
Boy/Male
Hindu
Win
Girl/Female
Indian
King of fame
CELLULAR DECONVOLUTION
CELLULAR DECONVOLUTION
CELLULAR DECONVOLUTION
CELLULAR DECONVOLUTION
CELLULAR DECONVOLUTION
n.
A cellular, flinty rock, used for mill stones.
n.
Inflammation of the cellular tissue in the vicinity of the uterus.
a.
Having the shape or appearance of little stars; radiated.
n.
An incipient ovule of soft cellular tissue.
a.
Cellular.
n.
The space or storerooms of a cellar; a cellar.
a.
Consisting of, or containing, cells; of or pertaining to a cell or cells.
n.
A swelling produced by gas or air diffused in the cellular tissue.
n.
Purulent inflammation of the cellular or areolar tissue.
n.
Inflammation of the cellular tissue around the kidney.
n.
A tumor produced by the escape of blood into the subcutaneous cellular tissue.
n.
Nascent cortex, or immature cellular bark.
n.
A coarse kind of rock, somewhat cellular in texture.
n.
Cellular slaggy lava; volcanic cinders.
a.
Marked with starlike spots of color.
n.
Dropsy of the subcutaneous cellular tissue; an effusion of serum into the cellular substance, occasioning a soft, pale, inelastic swelling of the skin.
n.
A small cell.
n.
Induration of the cellular tissue.
n.
A swelling from effusion of watery fluid in the cellular tissue beneath the skin or mucous membrance; dropsy of the subcutaneous cellular tissue.