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Large-scale study of proteins
Proteomics is the large-scale study of proteins. The proteome is the entire set of proteins produced or modified by an organism or system. Proteomics
Proteomics
Medical diagnostic technique
milestones in advances have been: Single-cell proteomics Techniques of SCOPE-MS and prioritized Single Cell ProtEomics (pSCoPE) allow for deep analysis of individual
Proteomic_profiling
Shotgun proteomics refers to the use of bottom-up proteomics techniques in identifying proteins in complex mixtures using a combination of high performance
Shotgun_proteomics
American biotechnology company
000-Sample Proteomics Study". Clinical Lab Products. Retrieved 2025-10-29. Wolski, Chris (2025-06-03). "Proteograph Platform Enables 20,000-Sample Proteomics Study"
Seer,_Inc.
Analytical chemistry technique
Quantitative proteomics is an analytical chemistry technique for determining the amount of various proteins, including cofactors, in a sample. The methods
Quantitative_proteomics
International working group
The Proteomics Standards Initiative (PSI) is a working group of the Human Proteome Organization. It aims to define data standards for proteomics to facilitate
Proteomics Standards Initiative
Proteomics_Standards_Initiative
Academic journal
category "Biochemical Research Methods". Volume 1, Issue 1 of Proteomics. "PROTEOMICS - Editorial Board - Wiley Online Library". onlinelibrary.wiley
Proteomics_(journal)
protein identification using mass spectrometry (MS; Bottom Up proteomics). Top-down proteomics using mass spectrometry interrogates protein structure through
Top-down_proteomics
Analytical technique to study proteins
Activity-based proteomics, or activity-based protein profiling (ABPP) is a chemoproteomic strategy that employs modular probes to directly assess the functional
Activity-based_proteomics
in high-throughput proteomics is called top-down proteomics and does not use proteolytic digestion. Essentially, bottom-up proteomics is a relatively simple
Bottom-up_proteomics
Public database of protein mass spectrometry data in Europe
The PRIDE (PRoteomics IDEntifications database) is a public data repository of mass spectrometry-based proteomics data, and is maintained by the European
Proteomics Identifications Database
Proteomics_Identifications_Database
The Australasian Proteomics Society (APS) is a learned society formed in 2004 from the Lorne Proteomics Symposia (LPS) meetings. The APS was expanded to
Australasian Proteomics Society
Australasian_Proteomics_Society
Stem cells
Stem cell proteomics is a developing field of omics that analyzes the proteomes of stem cells. The main interest of the application of proteomics on stem
Stem_cell_proteomics
Academic journal
Molecular & Cellular Proteomics. 8: 1–1. doi:10.1074/mcp.E900001-MCP200. "Mission Statement". Molecular & Cellular Proteomics. Archived from the original
Molecular & Cellular Proteomics
Molecular_&_Cellular_Proteomics
Set of proteins that can be expressed by a genome, cell, tissue, or organism
(December 2007). "Viral proteomics: global evaluation of viruses and their interaction with the host". Expert Review of Proteomics. 4 (6): 815–829. doi:10
Proteome
Academic journal
Abstracts Service, and EMBASE. "Clinical Proteomics". BioMed Central. Retrieved 2021-08-05. "Publication: Clinical Proteomics". Ingenta Connect. Archived from
Clinical_Proteomics
American chemist
the director of proteomics research at the Pacific Northwest National Laboratory (PNNL). Smith is also director of the NIH Proteomics Research Resource
Richard_D._Smith
Proteomics research center
The Netherlands Proteomics Centre (NPC) is a Dutch research center in the field of proteomics. The research is focused on the proteome, the entire set
Netherlands_Proteomics_Centre
Protein molecule receiving signals for a cell
In biochemistry and pharmacology, receptors are proteins that receive and transduce signals that may be integrated into biological systems. These signals
Receptor_(biochemistry)
Academic journal
Journal of Proteomics is a peer-reviewed scientific journal published by Elsevier. It is the official journal of the European Proteomics Association
Journal_of_Proteomics
Data analysis software for proteomics
The Trans-Proteomic Pipeline (TPP) is an open-source data analysis software for proteomics developed at the Institute for Systems Biology (ISB) by the
Trans-Proteomic_Pipeline
Suffix in biology
emerging field of biological research at the intersection of proteomics and genomics. Proteomics data used for gene annotations. Structural genomics: Study
Omics
Molecules which increase enzyme activity
Enzyme activators are molecules that bind to enzymes and increase their activity. They are the opposite of enzyme inhibitors. These molecules are often
Enzyme_activator
Tandem mass spectrometry method
Resolution and High Mass Accuracy Quantitative, Targeted Proteomics". Molecular & Cellular Proteomics. 11 (11): 1475–1488. doi:10.1074/mcp.O112.020131. ISSN 1535-9476
Selected_reaction_monitoring
Academic journal
Molecular Cell Research (accessed 21 April 2011) Elsevier: BBA – Proteins and Proteomics (accessed 21 April 2011) Elsevier: BBA – Reviews on Cancer (accessed 21
Biochimica_et_Biophysica_Acta
Proteogenomics research scientist
Membrane Proteomics: Opportunities for Mining Therapeutic Targets for Autosomal Dominant Polycystic Kidney Disease". Molecular & Cellular Proteomics. 7 (10):
Yu-Ju_Chen
Scientific study of animals
Photobiology Phycology Phylogenetics Physiology Pomology Primatology Proteomics Protistology Quantum biology Relational biology Reproductive biology Sociobiology
Zoology
Form of protein microarray
"Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-related antibodies". Molecular & Cellular Proteomics. 9 (6): 1271–80
Antibody_microarray
Oncologist
Clinical Inviestigation in 2012. Paulovich is an expert in proteomics. Her targeted proteomics method uses multiple reaction monitoring mass spectrometry
Amanda_Paulovich
Academic journal
Genomics and Proteomics was an open-access peer-reviewed academic journal that published papers in the fields of human genomics and proteomics, systems biology
Human_Genomics_and_Proteomics
Academic journal
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics is a peer-reviewed scientific journal that covers research in biochemistry and
Comparative Biochemistry and Physiology D
Comparative_Biochemistry_and_Physiology_D
American scientist
"Stephen K. Burley, M.D., D.Phil. | Center for Integrative Proteomics Research". proteomics.rutgers.edu. Archived from the original on 10 March 2016. Retrieved
Stephen_K._Burley
Academic journal
an open-access scientific journal covering all areas of genomics and proteomics. The journal was established in 2000 and is published by BioMed Central
BMC_Genomics
Containers for scientific data
2012). "File formats commonly used in mass spectrometry proteomics". Molecular & Cellular Proteomics. 11 (12): 1612–21. doi:10.1074/mcp.R112.019695. PMC 3518119
Mass_spectrometry_data_format
Chemist
in proteomics and the study of Alzheimer's disease, sepsis, and aging. She has developed a novel multiplexing strategy for quantitative proteomics called
Renã_A._S._Robinson
Swiss biologist (born 1954)
spectrometry and proteomics data, and he is one of the inventors of the Isotope-Coded Affinity Tag (ICAT) technique for quantitative proteomics, a technique
Ruedi_Aebersold
Canadian protein biochemist (born 1958)
spectrometry to protein primary structure, with applications in the fields of proteomics and analytical biochemistry. He has developed methods for measuring the
Ronald_Beavis
Specificity in Data-dependent Quantitative Label-free Shotgun Proteomics". Molecular & Cellular Proteomics. 15 (2): 657–668. doi:10.1074/mcp.M115.055897. PMC 4739679
List of mass spectrometry software
List_of_mass_spectrometry_software
Turkic ethnic group
193–230. doi:10.4436/jass.10017. PMID 36576953. Combining genomic and proteomic evidence, researchers revealed that these earliest residents in the Tarim
Uyghurs
Scientific study of life
Photobiology Phycology Phylogenetics Physiology Pomology Primatology Proteomics Protistology Quantum biology Relational biology Reproductive biology Sociobiology
Biology
Study of the structure of every protein in a genome
Medicine portal Hi-C (genomic analysis technique) Genomics Omics Structural proteomics Protein Structure Initiative Chandonia JM, Brenner SE (January 2006).
Structural_genomics
International consortium
and it promotes the development and awareness of proteomics research, advocates on behalf of proteomics researchers throughout the world, and facilitates
Human_Proteome_Organization
Laboratory technique for quantitative proteomics
SILAC, as a simple and accurate approach to expression proteomics". Molecular & Cellular Proteomics. 1 (5): 376–386. doi:10.1074/mcp.M200025-MCP200. PMID 12118079
Stable isotope labeling by amino acids in cell culture
Stable_isotope_labeling_by_amino_acids_in_cell_culture
Study of all proteins in an environment
Metaproteomics (also community proteomics, environmental proteomics, or community proteogenomics) is an umbrella term for experimental approaches to study
Metaproteomics
American computer scientist (born 1956)
Oncology Laboratory at USC. He co-founded Applied Proteomics (API) with David Agus to make proteomics-based biomarker discovery practical. Hillis and his
Danny_Hillis
Type of sexual assault involving sexual intercourse without consent
10 December 2015. Baarda, Benjamin I.; Sikora, Aleksandra E. (2015). "Proteomics of Neisseria gonorrhoeae: the treasure hunt for countermeasures against
Rape
Dutch bioinformatics organization
homepage "Netherlands Bioinformatics for Proteomics Platform". "Proteomics Data Processing Workflow". "Dutch Proteomics Platform". "BTN/GOBLET meeting | GOBLET"
Netherlands Bioinformatics Centre
Netherlands_Bioinformatics_Centre
Mass spectrometry proteomic analysis software suite
PRM data with various workflows. PEAKS Studio is a proteomics software program for bottom-up proteomics data collected by LC-MS and MS/MS designed for peptide
PEAKS
Medical model that tailors medical practices to the individual patient
including health and disease, so proteomics is helpful in early diagnosis. In the case of respiratory disease, proteomics analyzes several biological samples
Personalized_medicine
studies that use proteomic information, often derived from mass spectrometry, to improve gene annotations. The utilization of both proteomics and genomics
Proteogenomics
Israeli structural biologist (born 1943)
Institute of Science in Rehovot and is Co-Director of the Israel Structural Proteomics Center. Sussman was born in Philadelphia, Pennsylvania and grew up in
Joel_Sussman
Italian biologist and academic
mass spectrometry-based proteomics, the large-scale analysis of thousands of proteins from cells and tissues. Whilst proteomics offers the potential for
Paola_Picotti
American chemical biologist
Institute in La Jolla, California. Considered a co-inventor of activity-based proteomics and a substantial contributor to research on the endocannabinoid system
Benjamin_Cravatt_III
Medical condition
Hay–Wells syndrome (also known as AEC syndrome; see Etymology) is one of at least 150 known types of ectodermal dysplasia. These disorders affect tissues
Hay–Wells_syndrome
Species of bacterium
Hydrogenobacter thermophilus is an extremely thermophilic, straight rod (bacillus) bacterium. TK-6 is the type strain for this species. It is a Gram negative
Hydrogenobacter_thermophilus
Subfield
proteomics measures the localization and abundance of proteins at the subcellular level across a tissue. Immunohistochemistry-based spatial proteomic
Spatial_biology
Canadian cell biologist
Canadian National Proteomics Network Prix D’Excellence Award for Outstanding Contribution and Leadership to the Canadian Proteomics Community (2010).
John_J._M._Bergeron
Mass spectrometry software in proteomics
ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry data
ProteoWizard
American proteomicist
Associate Editor of Clinical Proteomics and a member of the Editorial Boards of Molecular and Cellular Proteomics, Proteomics, and the Journal of Clinical
Akhilesh_Pandey
American chemist
Electron-transfer dissociation Proteomics Quantitative proteomics and Isobaric labeling 2018, Discovery in Proteomic Sciences Award from the Human Proteome
Joshua_Coon
Iranian-American physician and entrepreneur
PMID 32699280. "Pushing the Boundaries of Biological Discovery in Proteomics". Proteomics & Metabolomics from Technology Networks. Retrieved 2024-10-26.
Omid_Cameron_Farokhzad
Type of mass spectrometry
spectrometer, this is called "bottom-up proteomics". Shotgun proteomics is a variant of bottom up proteomics in which proteins in a mixture are digested
Tandem_mass_spectrometry
Computational biologist
datasets. Key areas include: Proteomics: Developing methods for analyzing mass spectrometry data from shotgun proteomics experiments, including the widely
William_Stafford_Noble
Analytical technique used in molecular biology
(November 2010). "Subcellular fractionation methods and strategies for proteomics". Proteomics. 10 (22): 3935–3956. doi:10.1002/pmic.201000289. PMID 21080488
Western_blot
Chemical tagging technique used in quantitative proteomics
Isobaric labeling is a mass spectrometry strategy used in quantitative proteomics. Peptides or proteins are labeled with chemical groups that have nominally
Isobaric_labeling
Bioinformatics company
analysis in genomics and proteomics. The company provided a line of products that serve gene expression, sequencing, and proteomics markets. Customers included
Integromics
Dutch chemist
Scientific as the Orbitrap EMR and UHMR. In proteomics, Heck is most renowned for his work on quantitative proteomics, interactomics, and the analysis of post-translational
Albert_J._R._Heck
Indian scientist
Journal of Proteomics and Bioinformatics Reviewer of scientific journals: Annals of Neurology, Journal of Proteome Research, Proteomics, Proteomics: Clinical
R._Sirdeshmukh
Provisioner of scientific consumables, equipment, and services
partnered with the UK Biobank Pharma Proteomics Project (UKB-PPP) to support the world’s largest human proteomics study. Using the Olink Explore platform
Thermo_Fisher_Scientific
Family of protein kinases
In molecular biology, ribosomal s6 kinase (rsk) is a family of protein kinases involved in signal transduction. There are two subfamilies of rsk, p90rsk
Ribosomal_s6_kinase
Chinese biotechnology company
that serves the genetic sequencing, genotyping and gene expression, and proteomics markets. Its headquarters are located in Shenzhen, Guangdong, China. In
MGI_(company)
German physicist and biochemist (born 1959)
biochemist. He is doing research in the area of mass spectrometry and proteomics. Born in Thuine, Lower Saxony, he studied mathematics and physics at the
Matthias_Mann
American chemist
researchers in the world. His work is focused on developing tools and in proteomics and he specializes in mass spectrometry. He is best known for the development
John_R._Yates
The OpenMS Proteomics Pipeline (TOPP) is a set of computational tools that can be chained together to tailor problem-specific analysis pipelines for HPLC-MS
The OpenMS Proteomics Pipeline
The_OpenMS_Proteomics_Pipeline
Computational and mathematical modeling of complex biological systems
Afkhami, Ehsan; Ramoni, Marco F. (2007). "Bayesian methods for proteomics". Proteomics. 7 (16): 2843–2855. doi:10.1002/pmic.200700422. ISSN 1615-9861
Systems_biology
Species of virus
Adeno-associated viruses (AAV) are small viruses that infect humans and some other primate species. They belong to the genus Dependoparvovirus, which in
Adeno-associated_virus
Former professor at Harvard University, ETH Zurich, and the University of Florida
synthetic amino acid incorporated into synthetic polypeptides (synthetic proteomics). Benner has used synthetic organic chemistry and biophysics to create
Steven_A._Benner
measured by mass spectrometry and its analysis constitutes a type of proteomics known as secretomics. The term secretome was coined by Tjalsma and colleagues
Secretome
Non-sperm component of semen
; Yi, Xianhua; MacCoss, Michael J.; Swanson, Willie J. (2008-07-29). "Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating"
Seminal_fluid_protein
Israeli immunologist
Institute of Science. Her research is at the intersection of biochemistry, proteomics, and immunology, and addresses research questions in the fields of cancer
Yifat_Merbl
Type of knowledge base
scientific research, with notable applications in fields such as genomics, proteomics, and systems biology. The term was coined as early as 1972 by the Austrian
Knowledge_graph
Study of microscopic organisms (microbes)
Photobiology Phycology Phylogenetics Physiology Pomology Primatology Proteomics Protistology Quantum biology Relational biology Reproductive biology Sociobiology
Microbiology
Science regarding functions in organisms or living systems
Photobiology Phycology Phylogenetics Physiology Pomology Primatology Proteomics Protistology Quantum biology Relational biology Reproductive biology Sociobiology
Physiology
NIH center
The National Centers for Biomedical Computing (NCBCs) are part of the U.S. National Institutes of Health plan to develop and implement the core of a universal
National Centers for Biomedical Computing
National_Centers_for_Biomedical_Computing
Academic journal
and monitoring of inherited and infectious disease utilizing genomic, proteomic, and immunological techniques. The journal is abstracted and indexed in
Molecular_and_Cellular_Probes
"Mass spectrometry based glycoproteomics--from a proteomics perspective". Molecular & Cellular Proteomics. 10 (1) R110.003251. doi:10.1074/mcp.R110.003251
Glycoproteomics
Expert Protein-Analysis System
supports a range of life science and clinical research areas, from genomics, proteomics and structural biology, to evolution and phylogeny, systems biology and
Expasy
Medical diagnostic company
company that develops and produces antibodies, ELISA kits, ChIP kits, proteomic kits, and other related reagents used to study the cell signaling pathways
Cell_Signaling_Technology
Echinoderm genomic database
Human Genes and Diseases, Microarray Data and other Gene Expression, Proteomics Resources, Other Molecular Biology, Organelle Organisms echinoderms Contact
Echinobase
Blood in circulatory system with round nucleus
source of disease-related biomarkers: Evidence from comparative proteomics studies". PROTEOMICS – Clinical Applications. 18 (2) 2300072. doi:10.1002/prca.202300072
Peripheral blood mononuclear cell
Peripheral_blood_mononuclear_cell
Swiss bioinformatician
for protein analysis. Her efforts have been instrumental in advancing proteomics research, particularly through her contributions to the ExPASy (Expert
Elisabeth_Gasteiger
American biologist (born 1938)
colleagues created the technological foundation for the study of genomics and proteomics by developing five groundbreaking instruments - the protein sequencer
Leroy_Hood
Branch of biology that studies cells
Photobiology Phycology Phylogenetics Physiology Pomology Primatology Proteomics Protistology Quantum biology Relational biology Reproductive biology Sociobiology
Cell_biology
Branch of proteomics
Phosphoproteomics is a branch of proteomics that identifies, catalogs, and characterizes proteins containing a phosphate group as a posttranslational modification
Phosphoproteomics
Extinct species of mammoth
Orlando, L.; Willerslev, E.; Gilbert, M. T. P.; Olsen, J. V. (2012). "Proteomic analysis of a Pleistocene mammoth femur reveals more than one hundred
Woolly_mammoth
American biotechnology company
services that serves the sequencing, genotyping and gene expression, and proteomics markets, and serves more than 155 countries. Illumina's customers include
Illumina,_Inc.
British pharmaceutical and biotechnology company
Wayback Machine; John Carroll for FierceBiotech 15 May 2012 GSK snags proteomics platform tech in $98M Cellzome buyout John Carroll for FiercePharma. 12
GSK_plc
Family of insects
Repertoire of Blood-feeding Horsefly Salivary Glands". Molecular & Cellular Proteomics. 8 (9). Elsevier: 2071–2079. doi:10.1074/mcp.M900186-MCP200. PMC 2742439
Tabanidae
Branch of biology that studies biological systems at the molecular level
Photobiology Phycology Phylogenetics Physiology Pomology Primatology Proteomics Protistology Quantum biology Relational biology Reproductive biology Sociobiology
Molecular_biology
Biomolecule consisting of chains of amino acid residues
sets defines the field of proteomics, named by analogy to the related field of genomics. Key experimental techniques in proteomics include 2D electrophoresis
Protein
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