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Compressed data structure for pattern matching
In computer science, a compressed suffix array is a compressed data structure for pattern matching. Compressed suffix arrays are a general class of data
Compressed_suffix_array
Data structure for a string
In computer science, a suffix array is a sorted array of all suffixes of a string. It is a data structure used in, among others, full-text indices, data-compression
Suffix_array
Important examples of compressed data structures include the compressed suffix array and the FM-index, both of which can represent an arbitrary text
Compressed_data_structure
Computer science problem
runs in O ( n r ) {\displaystyle O(nr)} time. The array L stores the length of the longest common suffix of the prefixes S[1..i] and T[1..j] which end at
Longest_common_substring
Auxiliary data structure to the suffix array in computer science
traversals of the suffix tree, speeds up pattern matching on the suffix array and is a prerequisite for compressed suffix trees. The LCP array was introduced
LCP_array
Deterministic finite automaton accepting set of all suffixes of particular string
allows the storage, processing, and retrieval of compressed information about all its substrings. The suffix automaton of a string S {\displaystyle S} is
Suffix_automaton
Data structure
search time of the suffix tree. The compressed suffix array, a data structure that combines data compression with the suffix array, allowing the structure
Substring_index
Data organization and storage formats
of key values. Radix tree Suffix tree Suffix array Compressed suffix array FM-index Generalised suffix tree B-tree Judy array Trie X-fast trie Y-fast trie
List_of_data_structures
Compressed full-text substring index
FM-index is a compressed full-text substring index based on the Burrows–Wheeler transform, with some similarities to the suffix array. It was created
FM-index
Tree containing all suffixes of a given text
computer science, a suffix tree (also called PAT tree or, in an earlier form, position tree) is a compressed trie containing all the suffixes of the given text
Suffix_tree
Data structure
tree. This is because a DAFSA can compress identical branches from the trie which correspond to the same suffixes (or parts) of different words being
Ternary_search_tree
Type of formal grammar
DAFSA Substring index Suffix array Suffix automaton Suffix tree Compressed suffix array LCP array FM-index Generalized suffix tree Rope Ternary search
Regular_grammar
Algorithm to transform a regular expression into a finite automaton
DAFSA Substring index Suffix array Suffix automaton Suffix tree Compressed suffix array LCP array FM-index Generalized suffix tree Rope Ternary search
Thompson's_construction
Succinct data structure
bitvectors to arbitrary alphabets. Originally introduced to represent compressed suffix arrays, it has found application in several contexts. The tree is defined
Wavelet_Tree
Searching for patterns in compressed data
In computer science, compressed pattern matching (abbreviated as CPM) is the process of searching for patterns in compressed data with little or no decompression
Compressed_pattern_matching
Search tree data structure
called a suffix tree, can be used to index all suffixes in a text to carry out fast full-text searches. A specialized kind of trie called a compressed trie
Trie
File format for block-based Gzip compression
they are compressed into binary BAM format utilizing BGZF compression. For random access, an index file is created for a BGZF-compressed file, typically
BGZF
Data mining technique
DAFSA Substring index Suffix array Suffix automaton Suffix tree Compressed suffix array LCP array FM-index Generalized suffix tree Rope Ternary search
Sequential_pattern_mining
Technique used in signal processing and data compression
or DCT are required to represent it accurately, and the more it can be compressed. However, the implicit periodicity of the DFT means that discontinuities
Discrete_cosine_transform
Device or program that encodes/decodes audio data in some bitstream format
an audio codec is a computer program implementing an algorithm that compresses and decompresses digital audio data according to a given audio file or
Audio_codec
Computer technology
between words or sentences in speech and pauses between notes in music. By compressing the silent intervals, the audio files become smaller and easier to handle
Silence_compression
Type of finite-state machine in automata theory
{\displaystyle {\begin{array}{|c|cc|}{\bcancel {{}_{\text{State}}\quad {}^{\text{Input}}}}&0&1\\\hline p&\{p\}&\{p,q\}\\q&\emptyset &\emptyset \end{array}}} Since the
Nondeterministic finite automaton
Nondeterministic_finite_automaton
Functional programming construct
DAFSA Substring index Suffix array Suffix automaton Suffix tree Compressed suffix array LCP array FM-index Generalized suffix tree Rope Ternary search
Pattern_matching
Algorithmic problem on pairs of sequences
length of the LCS of X and Y. function LCSLength(X[1..m], Y[1..n]) C = array(0..m, 0..n) for i := 0..m C[i,0] = 0 for j := 0..n C[0,j] = 0 for i := 1
Longest_common_subsequence
American computer scientist
2009 SIGMOD Test of Time Award. R. Grossi and J. S. Vitter, Compressed Suffix Arrays and Suffix Trees, with Applications to Text Indexing and String Matching
Jeffrey_Vitter
JData Specification
compression, and _ArrayZipData_ - the compressed data byte-stream. For example, A complex-valued data record must be stored using the "annotated array format".
JData
Sequence of characters, data type
or it may be fixed (after creation). A string is often implemented as an array data structure of bytes (or words) that stores a sequence of elements, typically
String_(computer_science)
Lossless compression algorithm
high-entropy, random, or already compressed), adding minimal overhead (i.e. ~5 bytes per block). 01: A static Huffman compressed block, using a pre-agreed Huffman
Deflate
Algorithm used in data compression
such as bzip2. The algorithm can be implemented efficiently using a suffix array thus reaching linear time complexity. It was invented by David Wheeler
Burrows–Wheeler_transform
Data structure
computer science, a radix tree (also radix trie or compact prefix tree or compressed trie) is a data structure that represents a space-optimized trie (prefix
Radix_tree
files that are compressed, often by the SQ program. 7Z – 7-zip compressed file ACE – ace: ACE compressed file ALZ – ALZip compressed file ARC – pre-Zip
List_of_file_formats
Method for data management
required to store the word itself. An alternate representation is a suffix array, which is considered to require less virtual memory and supports data
Search_engine_indexing
Container file format family
Specifically, Flash Player now supports video compressed in H.264 (MPEG-4 Part 10), audio compressed using AAC (MPEG-4 Part 3), the F4V, MP4 (MPEG-4
Flash_Video
Instruction set of the Java virtual machine
add two doubles. The const, load, and store instructions may also take a suffix of the form _n, where n is a number from 0–3 for load and store. The maximum
JVM_bytecode
Searching for patterns in text
substring index, for example a suffix tree or suffix array, the occurrences of a pattern can be found quickly. As an example, a suffix tree can be built in Θ
String-searching_algorithm
Type of data transmission method
measured distance (pseudorange) to a navigation satellite over time is best compressed using a third-order delta, a "delta of deltas of deltas". In addition
Delta_encoding
Unit of information
string, a bit vector, or a single-dimensional (or multi-dimensional) bit array. A group of eight bits is called one byte, but historically, the size of
Bit
Sequence alignment and analysis software
Burrows-Wheeler transform, Bowtie 2 also uses an FM-index (similar to a suffix array) to keep its memory footprint small. Due to its implementation, Bowtie
Bowtie_(sequence_analysis)
Brand of laser printers
output and 4 ppm printing with PCL 4 enhancements such as support for compressed bitmapped fonts and raster images. It was also the first no ozone print
HP_LaserJet
Video display generator (VDG) by Motorola
(non-interlaced only). The chips can be found with ceramic (L suffix), plastic (P suffix) or CERDIP (S suffix) packages. MC6847 die MC6847 Die metal layer MC6847
Motorola_6847
Data structure which is efficient to both store in memory and query
trees, k {\displaystyle k} -ary trees and multisets, as well as suffix trees and arrays. The basic problem is to store a subset S {\displaystyle S} of
Succinct_data_structure
bladed/leaf shutter located near a nodal point of a lens. FPA Focal plane array. A matrix of sensors positioned in the focal plane of a lens or other focusing
List of abbreviations in photography
List_of_abbreviations_in_photography
primitive data types, Dates, Strings, small char or byte arrays, 'ByteStrings', 'huge array' indexes, Character Long Objects or Binary Long Objects, plus
InfinityDB
GPU by Matrox
over other cards of the time in the area of memory bandwidth. The "-512" suffix refers to the 512-bit ring bus. The Parhelia processor featured Glyph acceleration
Matrox_Parhelia
Culinary traditions of Singapore
siput, shellfish cooked in a thick coconut milk-based gravy. Lontong, compressed rice cakes (see ketupat) in a spicy vegetable soup. Nagasari, a rice snack
Singaporean_cuisine
Astrophysical phenomenon
name is formed from the prefix SN, followed by the year of discovery, suffixed with a one or two-letter designation. The first 26 supernovae of the year
Supernova
Signal processing algorithm
data into simpler forms. EEMD on the compressed data; this is the most challenging since on decomposing the compressed data there is a high probability to
Multidimensional empirical mode decomposition
Multidimensional_empirical_mode_decomposition
supercharger air intake was first compressed by the supercharger's first stage, or low blower. The intercooler stopped the compressed mixture from becoming too
North American P-51 Mustang variants
North_American_P-51_Mustang_variants
Belt of Eurasian mountain ranges
Tethyan orogenic belt, is a seismic and orogenic belt that includes an array of mountain ranges extending for more than 15,000 kilometres (9,300 mi)
Alpide_belt
Video encoding standard
format introduced as an alternative in MPEG-2). Video (compressed video content) Audio (compressed audio content), including MP3 and MP2 Conformance testing
MPEG-1
Type of memory used on processors that require high transfer rate memory
operation. HBM1 DRAM used a 500 MHz differential clock CK_t / CK_c (where the suffix "_t" denotes the "true", or "positive", component of the differential pair
High_Bandwidth_Memory
File format for gene sequences
is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. SAM files can be analysed and edited with the software
SAM_(file_format)
The 9670G was added and models with no suffix, "G" suffix, and "L" suffixes. By the end of 2009 a "C" suffix was added and expanded the list to 15 different
Avaya 9600-series IP deskphones
Avaya_9600-series_IP_deskphones
Device producing a high-temperature explosion
(θερμοβαρικός), from thermos (θερμός) 'hot' + baros (βάρος) 'weight, pressure' + suffix -ikos (-ικός) '-ic'. Other terms used for the family of weapons are high-impulse
Thermobaric_weapon
Methods in computational biology
S2CID 5953866. Välimäki N, Gerlach W, Dixit K, Mäkinen V (March 2007). "Compressed suffix tree--a basis for genome-scale sequence analysis". Bioinformatics
Alignment-free sequence analysis
Alignment-free_sequence_analysis
edge of the cotyledon lies along the folded radicle in the seed. -aceae Suffix added to the word stem of a generic name to form the name of a taxonomic
Glossary_of_botanical_terms
Historical dictionary of the English language
The rationale is etymological, in that the English suffix is mainly derived from the Greek suffix -ιζειν, (-izein), or the Latin -izāre. However, -ze
Oxford_English_Dictionary
Four-engined single-aisle airliner family
consumption and higher thrust. JT3D-engined 707s and 720s were denoted with a "B" suffix. While many 707-120Bs and -720Bs were conversions of existing JT3C-powered
Boeing_707
Romance language indigenous to the island of Sardinia
attached paragogic vowel; the suffix resisted Latinization in some place names, which show a Latin body and a Nuragic suffix. According to Bertoldi, some
Sardinian_language
Art and craft of writing screenplays
Characters who are speaking off-screen or in voice-over are indicated by the suffix (O.S.) and (V.O) respectively. Parentheticals provide stage direction for
Screenwriting
Series of multichannel audio technologies
the DTS soundtrack audio. The multi-channel DTS audio is recorded in compressed form on standard CD-ROM media at a bitrate of 882 kbit/s. The audio compression
DTS,_Inc.
Family of RISC-based computer architectures
processors since the ARM7TDMI (released in 1994) have featured the Thumb compressed instruction set, which have their own state. (The "T" in "TDMI" indicates
Arm_architecture_family
How science fiction has used the science of language as a subject
certain features of it. The word order of Quenya poetry is flexible, as the suffixes on the words showed their relationships, similar to many inflected languages
Linguistics in science fiction
Linguistics_in_science_fiction
British music equipment company
description such as JVMC212 (JVM cabinet 2×12-inch Celestion speakers) or a suffix C to denote a combo variant of an amplifier such as the Vintage Modern 2266C
Marshall_Amplification
Boyer–Moore Ukkonen's algorithm: a linear-time, online algorithm for constructing suffix trees Chien search: a recursive algorithm for determining roots of polynomials
List_of_algorithms
Seventh planet from the Sun
solar wind density at the time were unusually high, which could have compressed Uranus's magnetosphere. The interaction with the solar wind event could
Uranus
addresses. Examples: 40000-and-above on a 40K core array; 20000-and-above on a 20K core array. On a 10K core array, invalid addresses are detected by the address-bus
Timeline_of_binary_prefixes
from B. Pearson) 2002 UGENE Opensource Smith-Waterman for SSE/CUDA, Suffix array based repeats finder & dotplot Both Both UniPro 2010 water Smith-Waterman
List of sequence alignment software
List_of_sequence_alignment_software
into an instrument (also known as a document) stored in a file with the suffix .msc (Management Saved Console).] Shields, Paul; Crump, Ralph; Weiss, Martin
List of filename extensions (M–R)
List_of_filename_extensions_(M–R)
Species of fish
making for 22–24 rays total in the caudal fin. The body is somewhat compressed, and is at its greatest depth just past the start of the dorsal fin. No
Astyanax_boliviensis
Species of fish (fossil)
British geologist and paleontologist from the 1800s and early 1900s. The suffix -odus typically describes the animal's teeth, essentially making Hindeodus
Hindeodus
eat. The -vore suffix is derived from the Latin vorare, meaning 'to devour'. Equivalent adjectives can be formed through use of the suffix -vorous. For
Glossary_of_bird_terms
that employs "sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure", detects canonical
List of RNA-Seq bioinformatics tools
List_of_RNA-Seq_bioinformatics_tools
COMPRESSED SUFFIX-ARRAY
COMPRESSED SUFFIX-ARRAY
Boy/Male
Hindu
Defender of the oppressed
Boy/Male
Australian, Biblical, British, Christian, Danish, Dutch, English, French, German, Hawaiian, Hebrew
Weeps or Cries; The Persecuted; The Afflicted; Oppressed
Girl/Female
Arabic
Beautiful
Female
English
Pet form of English Saffron, SAFFIE means "saffron (the spice)."
Girl/Female
Arabic
Challenger Passionate
Biblical
tower compassed about
Surname or Lastname
English
English : possibly of Flemish origin, from a pet form of the Germanic personal name Bufo.English : alternatively, perhaps, from a diminutive of Old French bufe, buffe ‘blow’, ‘slap in the face’, hence probably a nickname for a rough or uncouth man.
Girl/Female
Muslim/Islamic
A person who follows Sufism - Clean heart
Male
English
Pet form of English Humphrey, HUFFIE means "peaceful giant."
Girl/Female
Welsh
Sapphire.
Surname or Lastname
English
English : from the Old Norse personal name Dólgfinnr, composed of the elements dólgr ‘wound’, ‘scar’Irish : reduced Anglicized form of Gaelic Ó Duibhchinn (see Diffin), Ó Duibhghinn (see Deegan), or perhaps Ó DaimhÃn (see Devine).
Girl/Female
Armenian, Australian, Danish, Finnish, German, Greek, Swedish
Wisdom
Boy/Male
Arabic, Muslim
Clean
Girl/Female
Danish Greek
Wise.
Boy/Male
Indian
Saffron the spice or yellow or precious or glowing, Best friend
Boy/Male
Tamil
Deenabandhave | திநாபஂதாவே
Defender of the oppressed
Deenabandhave | திநாபஂதாவே
Girl/Female
Biblical
Tower compassed about.
Girl/Female
Arabic, Muslim
A Person who Follows Sufism - Clean Heart
Girl/Female
Muslim
A person who follows sufism - clean heart
Surname or Lastname
English and French
English and French : from a personal name, Latin Rufinus, a derivative of Rufus (see Ruffo 1). This was popularized by various minor early saints, including a 3rd-century martyr of Soissons and a 4th-century Church Father.
COMPRESSED SUFFIX-ARRAY
COMPRESSED SUFFIX-ARRAY
Boy/Male
Hindu, Indian
Fearless
Girl/Female
Norse
Sister of Dagstygg.
Girl/Female
Australian, Italian
The Victorious One
Boy/Male
Arabic, Muslim
Servant of the Lord (Allah)
Girl/Female
Indian, Kannada
Wish; Angel
Girl/Female
African Arabic Muslim
Trustworthy.
Boy/Male
Indian, Punjabi, Sikh
Protected by the God King
Boy/Male
English
Friend of the north.
Boy/Male
Biblical
He that troubleth.
Girl/Female
Anglo, British, English, German
Supreme
COMPRESSED SUFFIX-ARRAY
COMPRESSED SUFFIX-ARRAY
COMPRESSED SUFFIX-ARRAY
COMPRESSED SUFFIX-ARRAY
COMPRESSED SUFFIX-ARRAY
imp. & p. p.
of Compress
n.
A sort of coarse stuff; as, buffin gowns.
suffix.
A variant of -hood.
a.
Compressed or flattened antero-posteriorly, or in a way opposite to the usual one.
n.
A machine for compressing gases; especially, an air compressor.
n.
The compressed clay of coal strata.
v. t.
To loosen from a fastening; to detach from anything that holds; to unsettle; as, to unfix a bayonet; to unfix the mind or affections.
a.
Flattened lengthwise.
p. pr. & vb. n.
of Suffix
n.
Anything which serves to compress
n.
A muscle that compresses certain parts.
v. t.
To press or squeeze together; to force into a narrower compass; to reduce the volume of by pressure; to compact; to condense; as, to compress air or water.
v. t.
To undergo; to be affected by; to sustain; to experience; as, most substances suffer a change when long exposed to air and moisture; to suffer loss or damage.
a.
Pressed together; compacted; reduced in volume by pressure.
v. t.
To subjoin, annex, or add at the close or end; to append to; to fix to any part of; as, to affix a syllable to a word; to affix a seal to an instrument; to affix one's name to a writing.
a.
Not fully compressed; partially or somewhat compressed.
v. i.
To feel or undergo pain of body or mind; to bear what is inconvenient; as, we suffer from pain, sickness, or sorrow; we suffer with anxiety.
n.
That which is affixed; an appendage; esp. one or more letters or syllables added at the end of a word; a suffix; a postfix.
imp. & p. p.
of Suffix