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Database of biological information
Biological databases are libraries of biological sciences, collected from scientific experiments, published literature, high-throughput experiment technology
Biological_database
Biological databases are stores of biological information. The journal Nucleic Acids Research regularly publishes special issues on biological databases
List_of_biological_databases
StarBase is a database for decoding miRNA-mRNA, miRNA-lncRNA, miRNA-sncRNA, miRNA-circRNA, miRNA-pseudogene, protein-lncRNA, protein-ncRNA, protein-mRNA
StarBase (biological database)
StarBase_(biological_database)
lists of databases or databanks: List of academic databases and search engines List of biodiversity databases List of biological databases List of chemical
Lists_of_databases
Organized collection of data in computing
Bank – European biological databasePages displaying short descriptions of redirect targets Hazardous Substances Data Bank – Database of toxic compounds
Database
Academic journal
Database: The Journal of Biological Databases and Curation is an online peer-reviewed open access scientific journal that publishes research on biological
Database_(journal)
Database of chemical compounds
from the chemical and biological literature, hosted by NCBI ChEMBL, a database of information about medicinal chemistry and biological activities of small
ZINC_database
The eggNOG database is a database of biological information hosted by the EMBL. It is based on the original idea of COGs (clusters of orthologous groups)
EggNOG_(database)
PolyQ is a biological database of polyglutamine repeats in disease and non-disease associated proteins. Trinucleotide repeat disorder Robertson, Amy L;
PolyQ_(database)
(Operon DataBase) is a database of conserved operons in sequenced genomes. Operon Okuda, Shujiro; Yoshizawa Akiyasu C (Jan 2011). "ODB: a database for operon
Operon_database
In the field of bioinformatics, a sequence database is a type of biological database that is composed of a large collection of computerized ("digital")
Sequence_database
Pathway Commons is a database of biological pathways and interactions. Biological pathway Reactome WikiPathways Cerami, Ethan G; Gross Benjamin E; Demir
Pathway_Commons
PANDIT is a database of multiple sequence alignments and phylogenetic trees covering many common protein domains. Pfam: database of protein domains Phylogeny
PANDIT_(database)
The Postcode Plants Database was a UK resource[clarification needed] for identifying locally native plants and species based on postcode, hosted by the
Postcode_Plants_Database
Topics referred to by the same term
Modchip, a chip modifying an electronic system Model organism database, a biological database Moving object detection, a computing technology related to
Mod
In bioinformatics, the Ciliate MDS/IES database is a biological database of spirotrich genes. Spirotrich Cavalcanti, Andre R O; Clarke Thomas H; Landweber
Ciliate_MDS/IES_database
Biological database
Mustard is a database that tracks Antimicrobial Resistance Determinants (ARDs). The method by which it tracks ARDs is using their own method adapted from
Mustard_Database
The Hymenoptera Genome Database (HGD) is a comprehensive resource supporting genomics of Hymenoptera. BeeBase Munoz-Torres, Monica C; Reese Justin T; Childers
Hymenoptera_Genome_Database
Collection of bioinformatics databases
Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances. KEGG
KEGG
Series of molecular interactions within a cell that produces some outcome
A free, manually curated online database of biological pathways. NCI-Nature Pathway Interaction Database: A database of human cellular signaling pathways
Biological_pathway
Open access DNA sequence database
completeness, biological context, and consistency, assign an accession number, and perform quality assurance checks before release to the public database. Submitted
GenBank
Patome is a database of biological sequence data of issued patents and/or published applications. Patents Gene patent Lee, Byungwook; Kim Taehyung; Kim
Patome
Bio2RDF is a biological database that uses semantic web technologies to provide interlinked life science data. DBpedia RDF Semantic web Belleau, François;
Bio2RDF
Computational biology database
SPIKE (Signaling Pathways Integrated Knowledge Engine) is a database of highly curated interactions for particular human pathways. SPIKE was developed
SPIKE_(database)
Database for DNA restriction enzymes
availability of each enzyme. REBASE is one of the longest running biological databases having its roots in a collection of restriction enzymes maintained
REBASE_(database)
Directory of allosteric proteins' structure
Allostery is the most direct and efficient way for the regulation of biological macromolecule function induced by the binding of a ligand at an allosteric
ASD_(database)
The RNA-binding Proteins Database (RBPDB) is a biological database of RNA-binding protein specificities that includes experimental observations of RNA-binding
RNA-binding_protein_database
The Mammalian Promoter Database (MPromDb) is a curated database of gene promoters identified from ChIP-seq. The proximal promoter region (upstream of the
Mammalian_promoter_database
is a biological database of Long non-coding RNAs The database focuses on those RNAs which have been experimentally characterised with a biological function
LncRNAdb
a database of integrative islands in prokaryotic genomes. Mobile genetic elements Mantri, Yogita; Williams Kelly P (Jan 2004). "Islander: a database of
Islander_(database)
Scientific project at the European Bioinformatics Institute
database website is mirrored at three different locations worldwide to improve the service. List of sequenced eukaryotic genomes List of biological databases
Ensembl genome database project
Ensembl_genome_database_project
The Molecular Modeling Database (MMDB) is a database of experimentally determined three-dimensional biomolecular structures and hosted by the National
Molecular_Modeling_Database
SNPSTR is a database of Snpstrs (a microsatellite with one or more tightly linked SNPs). Snpstr Short tandem repeat Microsatellite Single-nucleotide polymorphism
Snptstr_(database)
Interaction MAp (DIMA) is a database of predicted and known interactions between protein domains. Version 3.0 of the database was released in 2010. Protein
DIMA_(database)
U12 Intron Database (U12DB) is a biological database of containing the sequence of eukaryotic introns that are spliced out by a specialised minor spliceosome
U12_intron_database
Pseudogene is a database of pseudogenes annotations compiled from various sources. Gene prediction Glossary of genetics Index of molecular biology articles
Pseudogene_(database)
Effective is a database of predicted bacterial secreted proteins. Secreted proteins Jehl, Marc-André; Arnold Roland; Rattei Thomas (Jan 2011). "Effective--a
Effective_(database)
Public domain database of binding affinities for drugs and other chemical compounds
of drugs and other chemical compounds for a wide range of biological targets. The database primarily stores inhibition constant (Ki) values, which measure
Ki_Database
Database of enzymes
ThYme (Thioester-active enzYme) is database of enzymes constituting the fatty acid synthesis and polyketide synthesis cycles. Thioester Cantu, David C;
ThYme_(database)
Yael (Jan 2011). "RepTar: a database of predicted cellular targets of host and viral miRNAs". Nucleic Acids Res. 39 (Database issue). England: D188-94.
RepTar_(database)
Online biological database
IndExs – Index of Exsiccatae is an online biological database that plays a pivotal role in documenting more than 2,600 historical and ongoing series of
IndExs_–_Index_of_Exsiccatae
Database created to hold information related to biological taxa
A taxonomic database is a database created to hold information on biological taxa – for example groups of organisms organized by species name or other
Taxonomic_database
Database of voltage-gated potassium channels
VKCDB (Voltage-gated potassium Channel DataBase) is a database of functional data about the voltage-gated potassium channels. Voltage-gated potassium
Voltage-gated potassium channel database
Voltage-gated_potassium_channel_database
Institution and population-based biological database located in Estonia
population-based biological database and biobank which was established in 2000 to improve public health in Estonia. It contains health records and biological specimens
Estonian_Genome_Project
The Nucleic acid phylogenetic profiling (NAPP) is a database of coding and non-coding sequences according to their pattern of conservation across the other
NAPP_(database)
Biodatabase of genetic codes
Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection". Nucleic Acids Res. 39 (Database issue). England: D1-6. doi:10
Genetic_codes_(database)
Online database of Croatian vascular flora
Flora Croatica Database (FCD) is an online biological database that documents the vascular plant diversity of Croatia, with recent expansions to bryophytes
Flora_Croatica_Database
PlasmoDB is a biological database for the genus Plasmodium. The database is a member of the EuPathDB project. The database contains extensive genome, proteome
PlasmoDB
VirtualTaste is an online database involved in predicting and classifying the tastes of various chemical compounds. Aroma compounds Bitterant Sugar substitute
VirtualTaste
The Protein–RNA Interface Database (PRIDB) is a database of protein–RNA interfaces extracted from the Protein Data Bank. RNA-binding protein Protein Data
Protein-RNA interface database
Protein-RNA_interface_database
tRNAdb was a comprehensive biological database of transfer RNA (tRNA) sequences and tRNA genes. It originated as one of the first specialized compilations
TRNADB
Type of biological database
Model organism databases (MODs) are biological databases, or knowledgebases, dedicated to the provision of in-depth biological data for intensively studied
Model_organism_database
Database of mobile genetic elements
Gypsy (GyDB) is a wiki-style database of mobile genetic elements. Classification of mobile genetic elements Horizontal gene transfer Llorens, Carlos; Futami
Gypsy_(database)
Human autophagy database can be used further in bioinformatics applications. Given that these databases are a large store of biological information, these
Autophagy_database
Region Database (NPRD) is a database of nucleosome formation sites (NFSs).[when?] International Society for Computational Biology List of biological databases
Nucleosome positioning region database
Nucleosome_positioning_region_database
Organization of collected data
converting it into an electronic format, such as an entry into a biological database. In the contemporary era of big data, the curation of data has become
Data_curation
Non-B DB is a database integrating annotations and analysis of non-B DNA-forming sequence motifs. The database provides alternative DNA structure predictions
Non-B_database
Database of genomic annotations
The Pseudomonas Genome Database is a database of genomic annotations for Pseudomonas genomes. Winsor, Geoffrey L; Lam David K W; Fleming Leanne; Lo Raymond;
Pseudomonas_Genome_Database
Hollywood is a RNA splicing database containing data for the splicing of orthologous genes in different species. Alternative splicing EDAS AspicDB Holste
Hollywood_(database)
The Riken integrated database of mammals is an integrated database of multiple large-scale programs that have been promoted by the Riken institute. Riken
Riken integrated database of mammals
Riken_integrated_database_of_mammals
Databases for oncogenomic research are biological databases dedicated to cancer data and oncogenomic research. They can be a primary source of cancer
List of databases for oncogenomic research
List_of_databases_for_oncogenomic_research
Database of spliced mRNA sequences
The Exon-Intron Database (EID) is a database of spliced mRNA sequences. Alternative splicing Exon Intron Saxonov, S; Daizadeh I; Fedorov A; Gilbert W (Jan
Exon-intron_database
Database of transcription factor binding sites
Mapper(2) is a database of transcription factor binding sites in multiple genomes. Transcription factor Riva, Alberto (Jan 2012). "The MAPPER2 Database: a multi-genome
Mapper(2)
AAindex is a database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials. The data represent various physicochemical
AAindex
BriX is a database containing some protein fragments from 4 to 14 residue from non-homologous proteins. There are very few loops registered in Brix, so
Brix_(database)
British bioinformatician (born 1972)
Cambridge, UK. He has led the development of the Pfam biological database and introduced the Rfam database of RNA families. He has also been involved in the
Alex_Bateman
Database of personal genomics information
The Integrated Archive of Short-Read and Array (TIARA) database contains personal genomic information obtained from next generation sequencing techniques
TIARA_(database)
grant a license to a private company for the creation of a national biological database to store health information which could be used for research. The
Act_on_Health_Sector_Database
PSSRdb (Polymorphic Simple Sequence Repeats database) is a database of polymorphic simple sequence repeats sequence repeats Kumar, Pankaj; Chaitanya Pasumarthy
Polymorphic simple sequence repeats database
Polymorphic_simple_sequence_repeats_database
Integrated database
The Bovine Genome Database is an integrated database for the bovine genome. Bovine genome Childers, Christopher P; Reese Justin T; Sundaram Jaideep P;
Bovine_genome_database
1975 treaty that comprehensively bans biological weapons
The Biological Weapons Convention (BWC), or Biological and Toxin Weapons Convention (BTWC), is a disarmament treaty that effectively bans biological and
Biological_Weapons_Convention
Type of database
Siqueira, Maria E.; Moraes, Adriana V. (2015). "The use of DNA database of biological evidence from sexual assaults in criminal investigations: A successful
DNA_database
Biological database
AMDD otherwise known as Antimicrobial Drug Database is a biological database that seeks to consolidate antibacterial and antifungal drug information from
Antimicrobial_Drug_Database
The GPCRdb database is the main repository of curated data for G protein-coupled receptors (GPCRs). It integrates various web tools and diagrams for GPCR
G protein-coupled receptors database
G_protein-coupled_receptors_database
2008–2012 European database of transcript variants
The Alternative Splicing and Transcript Diversity database (ASTD) was a database of transcript variants maintained by the European Bioinformatics Institute
Alternative Splicing and Transcript Diversity database
Alternative_Splicing_and_Transcript_Diversity_database
The Generic Model Organism Database (GMOD) project provides biological research communities with a toolkit of open-source software components for visualizing
Generic Model Organism Database
Generic_Model_Organism_Database
browser is a graphical interface for displaying information from a biological database for genomic data. It is a software tool that displays genetic data
Genome_browser
The Tandem Repeats Database (TRDB) is a database of tandem repeats in genomic DNA. Gelfand, Yevgeniy; Rodriguez Alfredo; Benson Gary (January 2007). "TRDB--the
Tandem_Repeats_Database
TADB is a database of Type 2 toxin-antitoxin loci in bacterial and archaeal genomes. Toxin-antitoxin system Shao, Yucheng; Harrison Ewan M; Bi Dexi; Tai
Toxin-antitoxin_database
The Group I Intron Sequence and Structure Database (GISSD) is a database of Group I catalytic intron. Group I catalytic intron Zhou, Yu; Lu Chen; Wu Qi-Jia;
GISSD
TIGR plant repeat database is a repository of repetitive sequences in plants. repetitive sequences TIGR plant transcript assembly database Ouyang, Shu; Buell
TIGR_plant_repeat_database
The Synthetic Gene Database (SGDB) is a database of artificially engineered genes. Gene Wu, Gang; Zheng Yuanpu; Qureshi Imran; Zin Htar Thant; Beck Tyler;
Synthetic_Gene_Database
The Biomolecule Stretching Database contains information about the mechanostability of proteins based on their resistance to stretching. Sikora, Mateusz;
Biomolecule Stretching Database
Biomolecule_Stretching_Database
Committee Mutant Mouse Resource and Research Centers Reactome - a curated knowledgebase of biological pathways Undiagnosed Diseases Program (UDP) STRING v t e
The_Monarch_Initiative
Binary subcomplexes in proteins database (BISC) is a protein–protein interaction database about binary subcomplexes. Juettemann, Thomas; Gerloff Dietlind
BISC_(database)
Online database of enzymes
resource for enzymes and transporters. Rhea is integrated with major biological databases including UniProt, Gene Ontology, and ExPASy. It supports searching
Rhea_(database)
SCRIPDB was a database of chemical structures associated to patents. The database is no longer active or maintained. Heifets, Abraham; Jurisica Igor (Jan
SCRIPDB
human genetic variations and phenotypes, with supporting evidence. The database includes germline and somatic variants of any size, type or genomic location
ClinVar
The Allele Frequency Net Database (abbreviated AlFreD) is a database containing the allele frequencies of immune genes and their corresponding alleles
Allele_Frequency_Net_Database
The Ciona intestinalis protein database (CIPRO) is a protein database for the tunicate species C. intestinalis. Ciona intestinalis Endo, Toshinori; Ueno
Ciona intestinalis protein database
Ciona_intestinalis_protein_database
Database of non-collagenous extracellular matrix proteins
The Laminin database is a database of non-collagenous extracellular matrix proteins. Laminin Golbert, Daiane C F; Linhares-Lacerda Leandra; Almeida Luiz
Laminin_database
OMA (Orthologous MAtrix) is a database of orthologs extracted from available complete genomes. The orthology predictions of OMA are available in several
Orthologous_MAtrix
Functional Element SNPs Database (FESD) is a biological database of single nucleotide polymorphisms in molecular biology. The database is a tool designed to
Functional element SNPs database
Functional_element_SNPs_database
UgMicroSatdb (UniGene Microsatellites database) is a database of microsatellites present in uniGene. Microsatellites Unigene Aishwarya, Veenu; Sharma
UgMicroSatdb
resources include: LIPID MAPS Structure Database (LMSD) - a database of structures and annotations of biologically relevant lipids, containing over 50000
LIPID_MAPS
Biological database
The Comprehensive Antibiotic Resistance Database (CARD) is a biological database that collects and organizes reference information on antimicrobial resistance
Comprehensive Antibiotic Resistance Database
Comprehensive_Antibiotic_Resistance_Database
ConoServer is a database of toxins that are expressed by the predatory sea snails in the family Conidae, the cone snails. These toxins are known as conotoxins
ConoServer
ArachnoServer is a database storing information on the protein toxins from spider venoms. Herzig, Volker; Wood David L A; Newell Felicity; Chaumeil Pierre-Alain;
ArachnoServer
Biological database
European Pollen Database (EPD) is a freely available database of pollen frequencies, past and present, in the larger European area. The database is hosted by
European_Pollen_Database
The Human-transcriptome DataBase for Alternative Splicing (H-DBAS) is a database of alternatively spliced human transcripts based on H-Invitational. Alternative
Human-transcriptome DataBase for Alternative Splicing
Human-transcriptome_DataBase_for_Alternative_Splicing
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BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
BIOLOGICAL DATABASE
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