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Specialized form of workflow management in a scientific environment
A scientific workflow system is a specialized form of a workflow management system designed specifically to compose and execute a series of computational
Scientific_workflow_system
Kepler is a free software system for designing, executing, reusing, evolving, archiving, and sharing scientific workflows. Kepler's facilities provide
Kepler scientific workflow system
Kepler_scientific_workflow_system
Pattern of activity often with a result
focused on workflow management and the interoperability of workflow management systems, the Workflow Management Coalition. Scientific workflow systems: These
Workflow
Turkish-American data and computer scientist (born 1977)
the WIFIRE lab. Altintas is also the co-initiator of the Kepler scientific workflow system, an open-source platform that endows research scientists with
Ilkay_Altintas
Open-Source Workflow Management Platform
Nextflow is a scientific workflow system predominantly used for bioinformatic data analysis. It establishes standards for programmatically creating a series
Nextflow
Workflow system in biology
Galaxy is an open-source scientific workflow system designed to make research accessible, reproducible, and transparent. Originally developed for computational
Galaxy (computational biology)
Galaxy_(computational_biology)
other University of California campuses has created the Kepler scientific workflow system which is based on Ptolemy II. Eker, Johan; Janneck, Jorn; Lee
Ptolemy_Project
Discovery Net is one of the earliest examples of a scientific workflow system allowing users to coordinate the execution of remote services based on Web
Discovery_Net
using workflow editors. Workflow Workflow engine Workflow management system Workflow application Bioinformatics workflow management system Scientific workflow
Workflow_technology
Theory of management
Scientific management is a theory of management that analyzes and synthesizes workflows. Its main objective is improving economic efficiency, especially
Scientific_management
International federation of data repositories
analysis, extensions for Excel, the VisTrails scientific workflow, and the Kepler scientific workflow system. DataONE provides a place for scientists to
DataONE
Data analysis framework
Anduril is an open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki
Anduril_(workflow_engine)
American computer scientist
century Greek astronomer, mathematician, and geographer. The Kepler scientific workflow system is based on Ptolemy II. From 2005 to 2008 Lee was chair of the
Edward_A._Lee
Topics referred to by the same term
700 Series GPUs Kepler scientific workflow system, a software system for designing, executing, and sharing scientific workflows Kepler, a nickname for
Kepler_(disambiguation)
Topics referred to by the same term
trolleybus prototype Scientific Workflow System, scientific application software that composes, executes, and manages workflows Seawater scale, a measure
SWS
Open-source workflow language
Cuneiform is an open-source workflow language for large-scale scientific data analysis. It is a statically typed functional programming language promoting
Cuneiform (programming language)
Cuneiform_(programming_language)
License". geWorkbench. Columbia University. 15 June 2014. "Empowering Scientific Research with Nextflow + AI". 3 December 2024. "Trex-online". www.trex
List of open-source bioinformatics software
List_of_open-source_bioinformatics_software
Supernova Kepler Follow-up Program Kepler Input Catalog Kepler scientific workflow system Kepler Mire Kepler Museum Kepler Track Kepler College Johannes
List of things named after Johannes Kepler
List_of_things_named_after_Johannes_Kepler
Scientific workflow management system
VisTrails is a scientific workflow management system developed at the Scientific Computing and Imaging Institute at the University of Utah that provides
VisTrails
Open-source framework for researchers
optimizations The Raspberry Pi Foundation and the cTuning foundation released a CK workflow with a reproducible "live" paper to enable collaborative research into
Collective Knowledge (software)
Collective_Knowledge_(software)
Software infrastructure for improving research and storing data
inventory laboratory technicians. Key features include—but are not limited to—workflow and data tracking support, flexible architecture, and data exchange interfaces
Laboratory information management system
Laboratory_information_management_system
American technology company
1181–1191. doi:10.1002/qsar.200610089. Warr, Wendy A. (2012). "Scientific workflow systems: Pipeline Pilot and KNIME". Journal of Computer-Aided Molecular
SciTegic
2026 large language model by OpenAI
"best coding model yet" suited for complex reasoning, coding and agentic workflow. Terra is the intermediate version, capable lower-cost option that is competitive
GPT-5.6
Software for managing digital content
System (CMS)? Definition from WhatIs.com". SearchContentManagement. Retrieved 2019-09-23. Moving Media Storage Technologies: Applications & Workflows
Content_management_system
Open source workflow system
desktop authoring environment and enactment engine for scientific workflows. The Taverna workflow engine was also available separately, as a Java API, command
Apache_Taverna
Workflow management system
is an open-source workflow management system. It provides the necessary abstractions for scientists to create scientific workflows and allows for transparent
Pegasus_(workflow_management)
Software development term
Microsoft). Some of the advantages of a design system are: Streamlined design to production workflow. Creates a unified language between and within the
Design_system
American computer scientist
scientific computing. Her contributions include leading the design of the Pegasus scientific workflow management system, used by the LIGO scientific collaboration
Ewa_Deelman
American computer scientist
interests include scientific workflow systems, cloud computing, resource management, with particular emphasis on scientific workflow system management. Vetter
Jeffrey_Vetter
spreadsheets The Kidney and Urinary Pathway Database (KUPKB) Workflows for Ever (wf4ever) Scientific workflow preservation The consortium has three distinct phases:
MyGrid
Organized collection of data in computing
model sometimes involves input from business processes, or the analysis of workflow in the organization. This can help to establish what information is needed
Database
less formalized. The term content-oriented workflows is an umbrella term for several scientific workflow approaches, namely "data-driven", "resource-driven"
Content-oriented workflow models
Content-oriented_workflow_models
Grid computing project
The SHIWA project (Sharing Interoperable Workflows for large-scale scientific simulations on Available DCIs) within grid computing was a project led by
SHIWA_project
System to capture, manage, and present geographic data
broader sense, one may consider such a system also to include human users and support staff, procedures and workflows, the body of knowledge of relevant concepts
Geographic_information_system
Online platform used for sharing content
its digital rights management (DRM) system at the Academy of Motion Picture Arts and Sciences (AMPAS) Scientific and Technical Awards presentation. In
PIX_System
Health information technology
and person-specific information to enhance decision-making in clinical workflows. CDSS tools include alerts and reminders, clinical guidelines, condition-specific
Clinical decision support system
Clinical_decision_support_system
Standard for computational data-analysis workflows
PMC 5429012. PMID 27013646. Perkel, Jeffrey M. (2019). "Workflow systems turn raw data into scientific knowledge". Nature. 573 (7772): 149–150. Bibcode:2019Natur
Common_Workflow_Language
Framework for Distributed Data-Parallel Execution in the Kepler Scientific Workflow System Stratosphere project home page Stratosphere slide presentation
Parallelization_contract
Chronology of the ownership, custody or location of a historical object
GitHub. "Supporting infrastructure to run scientific experiments without a scientific workflow management system.: gems-uff/noworkflow". 19 December 2018
Provenance
American multinational software company
agentic workflows. The collaboration spans AI model development, 3D product visualization, document intelligence, and cloud media workflows, with a joint
Adobe_Inc.
Academic organisation in Australia
Virtual Laboratory, based on the Galaxy (computational biology) scientific workflow system. Schneider, Maria Victoria; Griffin, Philippa C; Tyagi, Sonika;
QFAB_Bioinformatics
American life sciences software company
the Enterprise Science Platform (L7 ESP), a system designed to unify scientific data and manage workflows for the pharmaceutical, biotech and diagnostics
L7_Informatics
American genomic data analysis software
University of California, San Diego. GenePattern is a powerful scientific workflow system that provides access to hundreds of genomic analysis tools. Use
GenePattern
interface, as from workflow components. The workflow engine of the OnlineHPC service was Taverna as traditionally used for scientific workflow execution in
OnlineHPC
Organizational development approach
like workflow design and knowledge transfer are properly included in the sociotechnical scope. Systems science portal Complex systems – System composed
Sociotechnical_system
English computer scientist
musicology and his projects build on Semantic Web, Web 2.0 and Scientific workflow system technologies. A notable contribution to the field of the Semantic
David_De_Roure
Science done using systematically-complex computation
Science 2.0 Scientific workflow system Bohle, S. "What is E-science and How Should it Be Managed?" Nature.com, Spektrum der Wissenschaft (Scientific American)
E-Science
(workflow management) and HT Condor scientific workflow system with the ExoGENI NIaaS platform to orchestrate the execution of large-scale scientific workflows
Renaissance Computing Institute
Renaissance_Computing_Institute
Dutch computer scientist and professor
information systems, workflow management, Petri nets, process mining, specification languages, and simulation. He is also known for his work on workflow patterns
Wil_van_der_Aalst
Technical publishing system
language-agnostic data science workflows, specifically acknowledging the growing adoption of Python alongside R in scientific research. In April 2026, Posit
Quarto_(software)
such as scientific workflows. The myExperiment website was launched in November 2007 and contains a significant collection of scientific workflows for a
MyExperiment
Purely functional package manager for the GNU system
condition for scientific workflows to be reproducible, as it is necessary to incorporate data collection and processing into the workflow. If this is added
GNU_Guix
Use of various control systems for operating equipment
schematics and diagrams. Ai CAD assistants are used as tools to help streamline workflow. Technologies like solar panels, wind turbines, and other renewable energy
Automation
independent vendors; Collective Knowledge is a cross-platform package and workflow framework with JSON API that can download binary packages or build them
List of software package management systems
List_of_software_package_management_systems
Type of data available for anyone to analyze
norms, infrastructures, and workflow remain unsatisfying in most disciplines. The storage and preservation of scientific data have been identified early
Open_scientific_data
Browser-based data capture software for academic research
Electronic Data Capture) is a browser-based, metadata-driven EDC software and workflow methodology for designing clinical and translational research databases
REDCap
US technology company
diagnostics, and related scientific research fields. Sapio's platform supports lab automation, data integration, and workflow management across the research
Sapio_Sciences
Scientific workflow software
LONI Pipeline is a free distributed system for designing, executing, monitoring and sharing scientific workflows on grid computing architectures. Pipeline
LONI_Pipeline
Theoretical framework
Some commonly used conceptual modeling techniques and methods include: workflow modeling, workforce modeling, rapid application development, object-role
Conceptual_model
Specialist field of computer science
accelerating research and innovation its capacity to automate workflows enhancing dissemination of scientific work As challenges: limitations and risks around transparency
Computational_science
Form of business process automation technology
a predefined workflow. It is sometimes referred to as software robotics (not to be confused with robot software). In traditional workflow automation tools
Robotic_process_automation
American industrial company
company specializes in providing essential technologies for connected workflow solutions; designing, developing, manufacturing and distributing professional
Fortive
System with multiple networked computers
event-driven systems. Events excel at state propagation and decoupled notifications, while messages are better suited for command execution, workflow orchestration
Distributed_computing
Document format for reporting studies in the scientific literature
In scientific writing, IMRAD or IMRaD (/ˈɪmræd/) (Introduction, Methods, Results, and Discussion) is a common organizational structure for the format of
IMRAD
American biotechnology company
benchmark studies indicate that nanoparticle-based plasma proteomics workflows significantly enhance proteome depth and improve quantitative precision
Seer,_Inc.
Concept in research ethics
Research integrity or scientific integrity is an aspect of research ethics that deals with best practice or rules of professional practice of scientists
Scientific_integrity
Field of study to extract knowledge from data
statistics, scientific computing, scientific methods, processing, scientific visualization, algorithms, coding (like Python, SQL, and R), and systems to extract
Data_science
R&D scientific software company in the US
research teams to collaborate using scientific teamboards that organize their research data and design ideas. Reaction Workflows, a graphical environment that
Dotmatics
US AI military intelligence program
machine learning and data integration across US military intelligence workflows, specifically in intelligence, surveillance, target acquisition, and reconnaissance
Project_Maven
Generative AI chatbot by OpenAI
responsibility for any research and cannot give consent to any terms of use. Scientific journals have had different reactions to ChatGPT. Some, including Nature
ChatGPT
A Workflow Manager captures control flow and data flow for complex processes, and allows for reproducibility and the construction of scientific pipelines
Apache_OODT
Financial software application
software includes auditing and local work-process approval, standardizing workflow, and collating and integrating financial documents for review. Debt
Treasury_management_system
Energy system models that are open source
energy-system models are energy-system models that are open source. Some may use third-party proprietary software as part of their workflows. These models
Open_energy_system_models
AI chatbot developed by Microsoft
disorient the familiar Word user, as the Copilot workflow has changed significantly: Former workflow: The writer drafts → selects the text (highlighted)
Microsoft_Copilot
Integration of software development and operations
is generally characterized by three key principles: shared ownership, workflow automation, and rapid feedback. From an academic perspective, Len Bass
DevOps
American multinational computational software company
business, a provider of engineering simulation and analysis software and workflows. Originally known as a creator of electronic design automation (EDA) software
Cadence_Design_Systems
American academic publisher
were manually typeset. After this date, it built an in-house workflow management system to produce its publications. In 2018, over 150 IGI Global publications
IGI_Global
methods, common documentation standards for data and data provenance, shared workflow, and shared model components. The ESMF project is distinguished by its
Earth System Modeling Framework
Earth_System_Modeling_Framework
American company that produces orthodontics devices
scanners and Invisalign clear aligners used in orthodontics and restorative workflow. It was founded in 1997 and is headquartered in Tempe, Arizona. The company
Align_Technology
AI that generates content
this application, incorporating generative AI into its website authoring workflow. In 2016, DeepMind's WaveNet demonstrated that deep neural networks can
Generative_AI
Georgian defense manufacturer
into production workflows. High-Mobility Mission-Critical System – Meomari 120: Conceptualized and designed a high-mobility delivery system, integrating
STC_Delta
Autonomous artificial intelligence agent
complex tasks. These configurations, known as orchestration patterns or workflows, include the following: Prompt chaining: A sequence where the output of
AI_agent
Programming language written graphically by a user
generated Yahoo! Pipes is a visual data-flow programming system to process web data YAWL, graphical workflow language AppWare, also known as MicroBrew, icon based
Visual_programming_language
Aspect of scientific research
; Fangohr, Hans (1 March 2021). "Using Jupyter for Reproducible Scientific Workflows". Computing in Science & Engineering. 23 (2): 36–46. arXiv:2102.09562
Reproducibility
Digital image capture for film
resolution. Broadly, two workflow paradigms are used for data acquisition and storage in digital cinematography. With video-tape-based workflow, video is recorded
Digital_cinematography
German computer scientist and mathematician
Application Systems. He holds many granted patents in the area of software. Frank Leymann's main contributions are from the domains of workflow systems, service-oriented
Frank_Leymann
American financial data company
system (OMS) provider. On March 20, 2017, FactSet acquired BISAM, a performance and risk provider, strengthening its coverage of critical workflows throughout
FactSet
Dutch computer scientist
revised view." (2006). Ludäscher, Bertram, et al. "Scientific workflow management and the Kepler system." Concurrency and Computation: Practice and Experience
Arthur_ter_Hofstede
Singapore-based healthcare technology company
for healthcare institutions. Cadi Scientific is known in the Singapore Healthcare market for its Cadi SmartSense System that is designed for tracking patients'
Cadi_Scientific
Software development company
for feature film, broadcast television, and multimedia post-production workflows. The plug-ins are compatible with various NLEs, including Adobe After
Boris_FX
London-based software company
develops tools for annotating visual data and automating document-based workflows using large language models. The company originated as Aipoly, founded
V7_(company)
Data that is findable, accessible, interoperable, and reusable
data in the conventional sense, but also to the algorithms, tools, and workflows that led to that data: all scholarly digital research objects benefit
FAIR_data
File system prioritizing associative access
subsections). For an e-mail, its sender, recipient and subject. In scientific workflows, provenance of a data file is important. A scientist might want to
Semantic_file_system
Java software and development tools
– workflow engine Cassowary – constraint solving Checkstyle – static code analysis GNU Classpath – standard library implementation Colt – scientific computing
List of Java software and tools
List_of_Java_software_and_tools
Statistical methods to build mathematical models of dynamical systems from measured data
behavior of a system is, it's not possible to search for meaningful actions. The workflow for creating a forward model is called system identification
System_identification
Type of extremely powerful computer
(2007). Grid computing: experiment management, tool integration, and scientific workflows. Springer. pp. 1–4. ISBN 978-3-540-69261-4. Knight, Will: "IBM creates
Supercomputer
Research institute at the University of Utah
for confocal microscopy data visualization. VisTrails - scientific workflow management system. Cleaver - multi-material tetrahedral meshing API and application
Scientific Computing and Imaging Institute
Scientific_Computing_and_Imaging_Institute
Step in the production cycle
requirements planning MRP II (Manufacturing Resources Planning) Scheduling Workflow Related kind of planning in organizations Employee scheduling Enterprise
Production_planning
Non-destructive audio, video, or image editing
hardware compression/playback cards. More importantly, the traditional tape workflow had involved editing from videotape, often in a rented facility. When the
Non-linear_editing
Research method using published knowledge as data
MeSH terms to represent scientific articles. This is used by the systems Manjal, BITOLA and LitLinker. One well-known system within the field is called
Literature-based_discovery
SCIENTIFIC WORKFLOW-SYSTEM
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