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Topics referred to by the same term
Look up PDB in Wiktionary, the free dictionary. PDB or pdb may refer to: Party of German-speaking Belgians (German: Partei der deutschsprachigen Belgier)
PDB
International open access database of large biological molecules
The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids,
Protein_Data_Bank
File format for protein data
The Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank
Protein Data Bank (file format)
Protein_Data_Bank_(file_format)
Container format
format is a special version of the PDB format. A PDB file contains a PDB header, PDB record headers and records. The PDB header is located at the beginning
PDB_(Palm_OS)
Daily US President intelligence briefing
The President's Daily Brief (PDB), sometimes referred to as the President's Daily Briefing or the President's Daily Bulletin, is a top-secret document
President's_Daily_Brief
File format for debugging information
commonly, program modules such as a DLL or EXE). PDB files commonly have a .pdb extension. A PDB file is typically created from source files during
Program_database
Bruneian police force sports club
After the reformation of the football pyramid by the newly formed NFABD, MS PDB FT finished third in their group at the 2011–12 Brunei National Football
Royal Brunei Police Force Sports Council
Royal_Brunei_Police_Force_Sports_Council
Organization that maintains the global open access Protein Data Bank
The Worldwide Protein Data Bank (wwPDB) is an organization that maintains the archive of macromolecular structure. Its mission is to maintain a single
Worldwide_Protein_Data_Bank
File format used for macromolecular structure data
incorporating elements from the PDB file format. mmCIF is intended as an alternative to the Protein Data Bank (PDB) format and is now the default format
Macromolecular Crystallographic Information File
Macromolecular_Crystallographic_Information_File
developed as a joint initiative between the RCSB PDB and PDBe, based on NGL (developed by RCSB PDB) and LiteMol (developed by PDBe) viewers. Its program
Mol*
2001 US presidential intelligence memo
covered your ass" has been erroneously linked to this PDB. This response, however, came from a separate PDB linked to Bin Laden from several months earlier
Bin Ladin Determined To Strike in US
Bin_Ladin_Determined_To_Strike_in_US
Software to solve or assist people in creating or solving chess problems
This article covers computer software designed to solve, or assist people in creating or solving, chess problems – puzzles in which pieces are laid out
Software for handling chess problems
Software_for_handling_chess_problems
Software for the visualisation of macromolecules
macromolecule structures, such as those found in the Protein Data Bank (PDB). It was originally developed by Roger Sayle in the early 1990s. Historically
RasMol
Pictorial database of 3D structures in the Protein Data Bank
of each 3D macromolecular structure deposited in the Protein Data Bank (PDB). The original version of the database was developed around 1995 by Roman
PDBsum
Chemical compound
Butyl PBD or b-PBD (short for butyl-phenyl-bipheny-oxydiazole) is a fluorescent organic compound used in the Liquid Scintillator Neutrino Detector (LSND)
Butyl_PBD
Creole spoken in northern Antigua
Retrieved 2025-01-31. "North Antiguan Dialect". pdb.simon.net.nz. Retrieved 2025-02-01. "Farquhar (1974)". pdb.simon.net.nz. Retrieved 2025-02-01. Antiguan
North_Antiguan_Creole
Protein-pigment complex
algae Porphyridium cruentum at pH8". RCSB Protein Data Bank (PDB). doi:10.2210/pdb3v57/pdb. PDB ID: 3V57. Retrieved 12 October 2012. {{cite journal}}: Cite
Phycoerythrin
Enzyme which generates DNA
Well-studied reverse transcriptases include: HIV-1 reverse transcriptase (PDB: 1HMV), from human immunodeficiency virus type 1, has two subunits, which
Reverse_transcriptase
Protein found in red algae
this protein have been solved by X-ray crystallography and deposited in the PDB. It has been shown in vitro to be a highly potent HIV entry inhibitor. It
Griffithsin
Milk-sugar digesting enzyme
available in the PDB for Human Beta-galactosidase PDBe-KB provides an overview of all the structure information available in the PDB for Escherichia coli
Lactase
File format that stores chemical formulae and structures
such as Jmol and KiNG, could read PDB files in gzipped format. The wwPDB maintained the specifications of the PDB file format and its XML alternative
Chemical_file_format
Junior Flat track roller derby league
The Pittsburgh Derby Brats (PDB) are an all-gender junior roller derby team based out of Pittsburgh, Pennsylvania. The Pittsburgh Derby Brats junior roller
Pittsburgh_Derby_Brats
Biological database of proteins
for uncategorized sequences. ECOD has the best PDB coverage of all three successors: it covers every PDB structure, and is updated biweekly. The direct
Structural Classification of Proteins database
Structural_Classification_of_Proteins_database
Visual representation of allowable protein conformations
Analysis tool for any uploaded PDB file, producing Ramachandran plots, computing dihedral angles and extracting sequence from PDB Archived 2016-03-05 at the
Ramachandran_plot
limited to plant plastids, under the name of the Plastid PDB, but was expanded and renamed Plant PDB in November 2007. Proteome Sun Q, Zybailov B, Majeran
Plant_Proteome_Database
Method of protein structure prediction
their homologous protein structures deposited in the Protein Data Bank (PDB), whereas homology modeling is used for those proteins which do. Threading
Threading_(protein_sequence)
Family of DNA sequences found in prokaryotic organisms
the PDB for UniProt: Q46901 (CRISPR system Cascade subunit CasA) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:
CRISPR
Protein in the extracellular matrix
available in the PDB for UniProt: P19137 (Laminin subunit alpha-1) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:
Laminin
Bioinformatics subfield
PDB has increased each year, being obtained typically by X-ray crystallography, NMR spectroscopy, or cryo-electron microscopy. The PDB format (.pdb)
Structural_bioinformatics
Protein Data Bank (PDB) was established in 1971 as the central archive of all experimentally determined protein structure data. Today the PDB is maintained
Protein_structure_database
Collection of open-source Python software tools for computational biology
include Clustal, BLAST, PHYLIP, and NEXUS. Structural formats include the PDB, which contains the 3D atomic coordinates of the macromolecules. It has provisions
Biopython
Enzyme
available in the PDB for UniProt: P20142 (Human Gastricsin) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: P0DJD7
Pepsin
Bangladeshi military personnel
original on 2025-05-18. Retrieved 2025-07-23. "New chairmen appointed to REB, PDB, and BERC". The Financial Express. Retrieved 2025-07-23. "Secret for success"
S_M_Zia-Ul-Azim
Bioinformatics and, since 2006, it is a partner in the Worldwide Protein Data Bank (wwPDB). The repository accepts NMR spectral data from laboratories around the world
Biological Magnetic Resonance Data Bank
Biological_Magnetic_Resonance_Data_Bank
Class of enzymes
three-dimensional structure has been elucidated and is available in the PDB (see links in the infobox). A member of the glycoside hydrolase family, myrosinase
Myrosinase
Class of enzymes
available in the PDB for Human Superoxide dismutase [Cu-Zn] PDBe-KB provides an overview of all the structure information available in the PDB for Human Superoxide
Superoxide_dismutase
Key enzyme of photosynthesis involved in carbon fixation
"Rubisco". Molecule of the Month. RCSB PDB (Research Collaboratory for Structural Bioinformatics PDB). doi:10.2210/rcsb_pdb/mom_2000_11. Lodish H, Berk A, Zipursky
RuBisCO
Type of globular protein produced by the liver
Albumin binding prediction Overview of all the structural information available in the PDB for UniProt: P02768 (Human Serum albumin) at the PDBe-KB.
Serum_albumin
Enzyme with key regulatory roles in most cells
onto the structure onto a related archaeal CCA tRNA nucleotidyltransferase (PDB: 1R89) allows for assignment of the residues to specific functions: γ-phosphate
Adenylyl_cyclase
Class of enzymes
as higher production yield, better curd texture and reduced bitterness. PDB: 1CZI; Groves MR, Dhanaraj V, Badasso M, Nugent P, Pitts JE, Hoover DJ,
Chymosin
Iraqi Shia militia group (2008–2014)
The Promised Day Brigade (PDB; Arabic: لواء اليوم الموعود, romanized: Liwāʾ al-Yawm al-Mawʿūd), originally called the Muqawimun (Arabic: المقاومون,
Promised_Day_Brigade
Secretoglobin protein
BGE is hypothesized to repel predators. Allergy to cats Fel d 4 Slow loris PDB: 1PUO; Kaiser L, Grönlund H, Sandalova T, Ljunggren HG, van Hage-Hamsten
Fel_d_1
Former American soft rock band
([poo-sette]; PDB) was an American soft rock group active in the 1970s and early 1980s. Conceived in 1973 as a string band from Cambridge, Massachusetts, PDB comprised
Pousette-Dart_Band
Soluble protein complex in blood plasma and involved in clot formation
available in the PDB for UniProt: P02671 (Fibrinogen alpha chain) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:
Fibrinogen
Mammalian protein found in Homo sapiens
Retrieved 2009-04-24.{{cite web}}: CS1 maint: deprecated archival service (link) PDB: 1suv; Cheng Y, Zak O, Aisen P, Harrison SC, Walz T (Feb 2004). "Structure
Transferrin
Enzyme that synthesizes RNA from an RNA template
Leviviridae. Bunyaviral RdRp monomer (PDB 5AMQ) resembles the heterotrimeric complex of Orthomyxoviral (Influenza; PDB 4WSB) RdRp. Since it is a protein universal
RNA-dependent_RNA_polymerase
Centre for research
databases together house over 50,000 reference genomes. Protein Data Bank (PDB) is a database of three dimensional structures of biological macromolecules
European Bioinformatics Institute
European_Bioinformatics_Institute
Enzyme
431–441. Bibcode:1992JExpB.172..431M. doi:10.1242/jeb.172.1.431. PMID 9874753. PDB: 5ARA; Zhou A, Rohou A, Schep DG, Bason JV, Montgomery MG, Walker JE, et al
ATP_synthase
Iron–sulfur proteins that mediate electron transfer in metabolic reactions
M205096200. PMID 12089152. family:"2fe2s shethna type ferredoxin family" PDB: 3P1M; Chaikuad A, Johansson, C, Krojer, T, Yue, et al. (2010). "Crystal
Ferredoxin
Retrieved 2025-02-01. "South Antiguan Dialect". pdb.simon.net.nz. Retrieved 2025-02-01. "North Antiguan Dialect". pdb.simon.net.nz. Retrieved 2025-02-01. "Antiguan
Languages of Antigua and Barbuda
Languages_of_Antigua_and_Barbuda
Class of enzymes
subunits. The active site for pyruvate dehydrogenase (image created from PDB: 1NI4) holds TPP through metal ligation to a magnesium ion (purple sphere)
Pyruvate_dehydrogenase
Peptide hormone
subsequent edits. (Audio help · More spoken articles) PDBe-KB provides an overview of all the structure information available in the PDB for Human Glucagon
Glucagon
Group of dehydrogenase enzymes
available in the PDB for Alcohol dehydrogenase 1A. PDBe-KB provides an overview of all the structure information available in the PDB for Alcohol dehydrogenase
Alcohol_dehydrogenase
Protein
In its natural form, monellin is composed of the two chains shown above (PDB: 3MON), but the protein is unstable at high temperatures or at extremes
Monellin
Terms used to convey the likelihood of an event occurring
leaders review it. This, the "August 6 PDB", is at the center of much controversy for the USIC. The August 6 PDB began with not only a vague warning in
Words of estimative probability
Words_of_estimative_probability
Topics referred to by the same term
directly to the intended article. In vitro maturation Protein Data Bank (PDB) ligand code for ivermectin Innoson Vehicle Manufacturing, in Nigeria Incremental
IVM
Class of enzymes
Self-stable region of a protein's chain that folds independently from the rest PDB: 3O08; Kuettner EB, Kettner K, Keim A, Svergun DI, Volke D (2010). "Crystal
Hexokinase
Iron-carrying protein
available in the PDB for UniProt: P02792 (Ferritin light chain) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:
Ferritin
Protein-coding gene in the species Homo sapiens
the N-terminal half of mammalian ZP3 (PDB: 3D4C, 3D4G, 3EF7, 5OSQ) as well as its full-length avian homolog (PDB: 3NK3, 3NK4) revealed that the protein's
ZP3
Class of enzymes
bisphosphatase (hydrolyses fructose 1,6-bisphosphate to fructose 6-phosphate) PDB: 4pfk; Evans PR, Farrants GW, Hudson PJ (June 1981). "Phosphofructokinase:
Phosphofructokinase_1
channel, composed of two hexamers. glutamine synthetase (PDB code: 2gls) Dodecameric ferritin (PDB code: 1qgh) Aβ42 - Amyloid-beta 42 Helicobacter pylori
Dodecameric_protein
Training facility of the U.S. Central Intelligence Agency
taught how to draft the President's Daily Brief (PDB); however, responsibility for producing the PDB was transferred from the CIA to the Director of National
CIA_University
Hemagglutinin of influenza virus
in the PDB for UniProt: K7N5L2 (Influenza A virus Hemagglutinin) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt:
Hemagglutinin_(influenza)
Protein found in humans
in the PDB for Human Fatty acid-binding protein, adipocyte PDBe-KB provides an overview of all the structure information available in the PDB for Mouse
Adipocyte_protein_2
Class of enzymes
(40): 37215–22. doi:10.1074/jbc.M101823200. PMID 11485995. S2CID 24354635. PDB: 1zvt; Corbett KD, Schoeffler AJ, Thomsen ND, Berger JM (August 2005). "The
Type_II_topoisomerase
Class of enzymes
salivary amylase: calcium ion visible in pale khaki, chloride ion in green. PDB 1SMD Identifiers EC no. 3.2.1.1 CAS no. 9000-90-2 Databases IntEnz IntEnz
Amylase
Database branch of the US National Library of Medicine
composed of nucleotide sequences from PDB and GenBank, protein sequences from SWISS-PROT, translated GenBank, PIR, PRF, PDB, and associated abstracts and citations
National Center for Biotechnology Information
National_Center_for_Biotechnology_Information
Mammalian protein found in humans
in the UCSC Genome Browser. Overview of all the structural information available in the PDB for UniProt: P02741 (C-reactive protein) at the PDBe-KB.
C-reactive_protein
IC50) for the protein-ligand complexes deposited in the Protein Data Bank (PDB). It thus provides a link between energetic and structural information of
PDBbind_database
PDB accession codes PDB: 3N53, PDB: 3N3T, PDB: 3MTK, PDB: 2WB4, PDB: 3KZP, PDB: 3HVA, PDB: 3I5A, PDB: 3IGN, PDB: 3HVW, PDB: 3H9W, and PDB:
Diguanylate_cyclase
Enzyme
77–84. doi:10.1046/j.1365-2958.2003.03425.x. PMID 12657046. S2CID 21383026. PDB: 1HND, 1HNH, 1HNJ; Qiu X, Janson CA, Smith WW, Head M, Lonsdale J, Konstantinidis
Beta-ketoacyl-ACP synthase III
Beta-ketoacyl-ACP_synthase_III
Family of proteins which produce bioluminescence
Key interaction observed between K529 and carbonyl oxygen of adenylate. PDB 4G36]] The luciferase of Photinus pyralis catalyzes a two-step bioluminescent
Luciferase
Medication used to treat hypertension and heart failure
anhydrous: 7Q3P4BS2FD Y KEGG D00362 Y ChEBI CHEBI:43755 N ChEMBL ChEMBL1237 Y PDB ligand LPR (PDBe, RCSB PDB) CompTox Dashboard (EPA) DTXSID6040537 ECHA InfoCard 100.071
Lisinopril
Form of vitamin B-12
12 as a built-in cofactor are methylmalonyl-CoA mutase (PDB 4REQ) and methionine synthase (PDB 1Q8J). Methylcobalamin and 5-methyltetrahydrofolate are
Cyanocobalamin
and mundane bioinformatics tasks such as to parsing a Protein Data Bank (PDB) file, interacting with Jmol and many more. This application programming
BioJava
interactions (or domain-domain interactions). It contains interactions observed in PDB crystal structures, and those predicted by several computational approaches
Domine_Database
Family of globular proteins
Albumin website Albumin binding prediction PDBe-KB provides an overview of all the structure information available in the PDB for Human Serum albumin.
Albumin
Measure of relative carbon-13 concentration in a sample
of PDB standard, the supply was ultimately exhausted. Other standards calibrated to the same ratio, including one known as VPDB (for "Vienna PDB"), have
Δ13C
Class of enzymes
structures have been solved for this class of enzymes, and are deposited in the PDB. All have a 3-layer (aba) sandwich) architecture (CATH code 3.40.1160.10)
UMP_kinase
Enzyme involved in messenger RNA editing
APOBEC3G APOBEC3H APOBEC4 Activation-induced (cytidine) deaminase (AID) PDB: 2NYT; Prochnow C, Bransteitter R, Klein MG, Goodman MF, Chen XS (January
APOBEC
Class of enzymes
060194.002101. "PDB101: Molecule of the Month: Carbonic Anhydrase". RCSB: PDB-101. Retrieved 3 December 2018. Supuran CT (27 May 2004). "Carbonic Anhydrases:
Carbonic_anhydrase
Class of enzymes
available in the PDB for UniProt: P00970 (DNA ligase) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: P18858
DNA_ligase
Class of enzymes capable of forming isopeptide bonds in certain regions of proteins
late 2007, 19 structures have been solved for this class of enzymes, with PDB accession codes 1EVU, 1EX0, 1F13, 1FIE, 1G0D, 1GGT, 1GGU, 1GGY, 1IU4, 1KV3
Transglutaminase
Protein-coding gene in the species Homo sapiens
Pathology Outlines. Overview of all the structural information available in the PDB for UniProt: P02786 (Human Transferrin receptor protein 1) at the PDBe-KB
Transferrin_receptor_1
Organization of collected data
org/research/themes/user-studies/dipir.html "RCSB PDB: About the PDB Archive and the RCSB PDB". About the PDB Archive and the RCSB PDB. Archived from the original on 24
Data_curation
Mammalian protein found in humans
available in the PDB for UniProt: P10645 (Chromogranin-A) at the PDBe-KB. Overview of all the structural information available in the PDB for UniProt: P26339
Chromogranin-A
Enzyme family protecting the organism from oxidative damages
Catalase Superoxide dismutase Glutathione reductase Selenium deficiency PDB: 1GP1; Epp O, Ladenstein R, Wendel A (June 1983). "The refined structure
Glutathione_peroxidase
Chemical compound and enzyme
1038/nsb1297-1032. PMID 9406554. S2CID 8535268. "Peroxidase C1A Related PDB sequences". UniPDB. European Bioinformatics Institute. Veitch NC (February 2004). "Horseradish
Horseradish_peroxidase
Class of enzymes
has been crystallised in several forms and the structures placed in the PDB. These explain how T7 polymerase binds to DNA and transcribes it. The N-terminal
T7_RNA_polymerase
Protein-coding gene in the species Homo sapiens
Retrieved 2018-05-16. PDBe-KB provides an overview of all the structure information available in the PDB for Mouse PDZ domain-containing protein 9 v t e
PDZ_domain_containing_9
Class of enzymes
bacteria have also a class-I GS). GSII are decamer of identical subunits.PDB: 2OJW. Plants have two or more isozymes of GSII, one of the isozymes is
Glutamine_synthetase
Large molecular machine for synthesizing proteins from messenger RNA
PDB identifier 2XZM 40S subunit viewed from the solvent-exposed side, PDB identifier 2XZM 60S subunit viewed from the subunit interface side, PDB identifiers
Eukaryotic_ribosome
Medium for yeast growth
"YPD media". Cold Spring Harbor Protocols. 2010 (9) pdb.rec12315. 2010-09-01. doi:10.1101/pdb.rec12315. ISSN 1940-3402. "Yeast Extract-Peptone-Dextrose
YEPD
Enzyme in humans
Bibcode:1990PNAS...87.8296A. doi:10.1073/pnas.87.21.8296. PMC 54942. PMID 2172980. PDB: 1Z68; Aertgeerts K, Levin I, Shi L, Snell GP, Jennings A, Prasad GS, Zhang
Fibroblast activation protein, alpha
Fibroblast_activation_protein,_alpha
Species of bacteria
PMID 29627231. "PDB101: Molecule of the Month: Proton-Gated Urea Channel". RCSB: PDB-101. Archived from the original on 6 November 2023. Retrieved 6 November
Helicobacter_pylori
Document viewer
(TCR), Mobipocket (MOBI), AZW, multi-page TIFF, text file (TXT), PalmDoc (PDB), Windows Metafile (EMF), Windows Metafile (WMF), bitmap (BMP), Graphics
STDU_Viewer
Enzymes that catalyze DNA formation
at the U.S. National Library of Medicine Medical Subject Headings (MeSH) PDB Molecule of the Month DNA polymerase Unusual repair mechanism in DNA polymerase
DNA_polymerase
Enzyme involved in blood coagulation in humans
information available in the PDB for Human Thrombin. PDBe-KB provides an overview of all the structure information available in the PDB for Mouse Thrombin. Portal:
Thrombin
Political party in Belgium
together politicians from the previous Party of German-speaking Belgians (PDB) and Parteilos Jugendliche Unabhängige (PJU) movement. The party was formed
ProDG_(Belgium)
"Krebs-Henseleit (KH) Buffer". Cold Spring Harbor Protocols. 2006 pdb.rec581. 1 June 2006. doi:10.1101/pdb.rec581. Retrieved 6 May 2021. curehunter.com > Krebs–Henseleit
Krebs–Henseleit_solution
PDB
PDB
PDB
PDB
Boy/Male
Indian, Sanskrit
Whose Eyes Reflect Auspiciousness
Girl/Female
Muslim
Girl/Female
Hindu, Indian, Sanskrit
Mountainous
Surname or Lastname
Scottish
Scottish : variant of Tulloch. In Scotland it is pronounced tyookh.English : nickname for a valiant or stubborn person, from Middle English togh, tow(e) ‘steadfast’.
Boy/Male
Indian
The all-encompassing, The all-embracing
Girl/Female
Tamil
Unique
Girl/Female
Gujarati, Hindu, Indian, Kannada, Malayalam, Marathi, Sanskrit, Sindhi, Telugu, Traditional
Healing Hand Movement; Expression
Boy/Male
Tamil
Sriyan | à®·à¯à®°à¯€à®¯à®¾à®¨
Sree Maha Vishnu
Boy/Male
Arabic, Muslim
Worshipper
Boy/Male
Hindu, Indian
Moon
PDB
PDB
PDB
PDB
PDB