Reference for REGULONDB. Search for REGULONDB

AI searches containing REGULONDB

REGULONDB

RegulonDB

RegulonDB is a database of the regulatory network of gene expression in Escherichia coli K-12. RegulonDB also models the organization of the genes in transcription

RegulonDB

Sigma factor

Protein needed for initiation of transcription in prokaryotes

that is, they can respond to two different sigma factors, as reported in RegulonDB. The most common ones are those promoters that can respond to both sigma

Sigma factor

Sigma_factor

Julio Collado-Vides

Guatemalan scientist and professor

particular, creating a model of the regulatory network of E. coli K-12. The RegulonDB database (released in 2010) makes this data available. He has also been

Julio Collado-Vides

Julio_Collado-Vides

JASPAR

Database of biological data

RegTransBase - transcription factor binding sites in a diverse set of bacteria. RegulonDB – Primary database on transcriptional regulation in Escherichia coli TRRD

JASPAR

DNA binding site

Regions of DNA capable of binding to biomolecules

Public [5] RegTransBase Prokaryotes Expert/literature curation Public [6] RegulonDB Escherichia coli Expert curation Public [7] Archived 2017-05-07 at the

DNA binding site

DNA_binding_site

Gene regulatory network

Collection of molecular regulators

predictable from the topology and logic of the gene network that is reported in RegulonDB. Specifically, on average, the response strength of a gene was predictable

Gene regulatory network

Gene_regulatory_network

Fabio Rinaldi

Research scientist

Center for Genomic Sciences (UNAM, Mexico), where he collaborated with the RegulonDB group. He is the initiator and team leader of the (former) OntoGene research

Fabio Rinaldi

Fabio_Rinaldi

Αr35 RNA

and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from

Αr35 RNA

Αr35_RNA

Αr14 RNA

and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from

Αr14 RNA

Αr14_RNA

Αr9 RNA

and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from

Αr9 RNA

Αr9_RNA

Αr15 RNA

and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from

Αr15 RNA

Αr15_RNA

Αr7 RNA

RegPredict, and used those position weight matrices (PSWM) provided by RegulonDB. We built PSWM for each transcription factor from the RegPredict sequences

Αr7 RNA

Αr7_RNA

Αr45 RNA

and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from

Αr45 RNA

Αr45_RNA

Online names & meanings

Meiyappan

Boy/Male

Hindu, Indian

Meiyappan

True

Tubb

Surname or Lastname

English

Tubb

English : from the Middle English personal name Tubbe, apparently derived from either Old Norse Tubbi or Old English Tubba (an unattested form, evidence for which is found in the place name Tubney, Berkshire). There is no evidence to support the suggestion that it might be a metonymic occupational name or nickname from Middle English tub â€˜barrelâ€™.