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Program for simulating chemical structures
A molecule editor is a computer program for creating and modifying representations of chemical structures. Molecule editors can manipulate chemical structure
Molecule_editor
Molecule editor Java applet
The JME Molecule Editor is a molecule editor Java applet with which users make and edit drawings of molecules and reactions (including generating substructure
JME_Molecule_Editor
Molecular builder/editor software
Avogadro is a molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials
Avogadro_(software)
Chemical species structure notation
be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules. The original SMILES
Simplified Molecular Input Line Entry System
Simplified_Molecular_Input_Line_Entry_System
Open-source toolkit for cheminformatics
Proprietary ACD/ChemSketch BIOVIA Draw ChemDoodle ChemDraw ChemWindow JME Molecule Editor MarvinSketch PICTO Others Aqion EXC code GenX GSim Mercury CrystalExplorer
RDKit
Software for drawing chemical structures
ChemDraw™ is a molecule editor and communication suite, for the management, reporting, and presentation of chemistry research and discoveries. ChemDraw
ChemDraw
Study of the 3D shapes of molecules
three-dimensional arrangement of the atoms that constitute a molecule. It includes the general shape of the molecule as well as bond lengths, bond angles, torsional
Molecular_geometry
Identifier for chemical substances
downloaded from the InChI GitHub site. Beside the implementation in molecule editors, stand-alone executables have been packaged for multiple Linux distributions
International Chemical Identifier
International_Chemical_Identifier
Open-source Java viewer for 3D chemical structures
software packages List of molecular graphics systems Molecular graphics Molecule editor Proteopedia PyMOL SAMSON SMILES Jmol translations Chen, Jim X. (2008)
Jmol
– plugin-extensible molecule visualisation BALLView – molecular modeling and visualisation Jmol – 3D representation of molecules in many formats, for
List of free and open-source software packages
List_of_free_and_open-source_software_packages
structure editor for marked up web documents, but supports the display and manipulation of raw HTML text as well. Similarly, molecule editors typically
Structure_editor
Chemical information database
hydrogen bond donor and acceptor count. PubChem contains its own online molecule editor with SMILES/SMARTS and InChI support that allows the import and export
PubChem
Molecular modeling software
Glide is a molecular modeling software for docking of small molecules into proteins and other biopolymers. It was developed by Schrödinger, Inc. Kirkpatrick
Glide_(docking)
Agile Molecule AutoDock Suite of automated docking tools Linux, Mac OS X, SGI IRIX, and Windows GPL Scripps Research Avogadro C++ (Qt) based molecule editor
List of open-source bioinformatics software
List_of_open-source_bioinformatics_software
Chemical structure representation
if the members of the Markush structure do not share a common use. Molecule editor Chemical file format List of patent claim types § Markush Barnard,
Markush_structure
Molecular modeling program
structures of various entity. Software design 3D graphics software Molecule editor "Chemsketch". Archived from the original on 3 July 2014. Retrieved
ACD/ChemSketch
Notation used for specifying substructural patterns in chemical molecules
specification (SMARTS) is a language for specifying substructural patterns in molecules. The SMARTS line notation is expressive and allows extremely precise and
SMILES arbitrary target specification
SMILES_arbitrary_target_specification
File viewer and editor for chemical structures
JChemPaint is computer software, a molecule editor and file viewer for chemical structures using 2D computer graphics. It is free and open-source software
JChemPaint
Carlo molecular modeling Molecular mechanics Molecular design software Molecule editor Comparison of software for molecular mechanics modeling Molecular modeling
Comparison of force-field implementations
Comparison_of_force-field_implementations
606){\sixunitv{}{2D==O;1==OH}{cdef}} \end{picture} \end{document} ppchTeX Molecule editor List of TeX extensions Fujita, Shinsaku (1996-08-16). "XyMTeX: A Macro
XyMTeX
molecule at the amino-acid sequence level, then "zoom in" to the atomic level at a particular site of conjugation or derivatization. The HELM Editor and
Hierarchical editing language for macromolecules
Hierarchical_editing_language_for_macromolecules
software for molecular mechanics modeling Molecular design software Molecule editor Molecular modeling on GPUs List of software for nanostructures modeling
List of quantum chemistry and solid-state physics software
List_of_quantum_chemistry_and_solid-state_physics_software
modeling Open-source Glide (docking) Docking Commercial JME Molecule Editor 2D molecule editor Free JOELib Cheminformatics Open-source Khimera Molecular
List of computational chemistry software
List_of_computational_chemistry_software
Topics referred to by the same term
and record producer J-Me (born 1985), Burmese rapper JME Molecule Editor, a Molecule Editor applet jMonkeyEngine, a Java scenegraph API Juvenile myoclonic
JME
Discovering chemical properties by physical simulations
theoretical and computational, used to model or mimic the behaviour of molecules. The methods are used in the fields of computational chemistry, drug design
Molecular_modelling
Molecular design software Molecular dynamics Molecular modeling on GPUs Molecule editor PyMOL "Citations for Amber". ambermd.org. Retrieved 2021-06-15. Harrison
Comparison of software for molecular mechanics modeling
Comparison_of_software_for_molecular_mechanics_modeling
Chemical structure drawing and publishing program
ChemWindow is a molecule editor and publishing program now published by John Wiley & Sons as of 2020, and originally developed by Bio-Rad Laboratories
ChemWindow
Online database of enzymes
the Ligand structure search, who developed the JavaScript-based JSME molecule editor, users can draw a chemical structure and search the BRENDA ligand database
BRENDA
Ligand Design FE - Free Energy approximations SN - Space Navigation Molecule editor Molecular modelling Molecular modeling on GPUs Protein design Drug
Molecular_design_software
Use of classical mechanics to model molecular systems
Tinker X-PLOR Yasara Zodiac Molecular graphics Molecular dynamics Molecule editor Force field (chemistry) Comparison of force field implementations Molecular
Molecular_mechanics
software for molecular mechanics modeling Molecular design software Molecule editor Molecular modeling on GPU List of software for nanostructures modeling
List of computer-assisted organic synthesis software
List_of_computer-assisted_organic_synthesis_software
Computer software
confusions among users, the ChemoJava project was instantiated. 2D molecule editor and generator 3D geometry generation ring finding aromaticity detection
Chemistry_Development_Kit
molecular mechanics modeling Molecular design software Molecular graphics Molecule editor "Debian -- Details of source package ball in sid". Retrieved 9 August
BALL
Molecular modelling software
systems Molecular modelling Molecular graphics Molecular dynamics Molecule editor Software for molecular mechanics modeling Pettersen, EF; Goddard, TD;
UCSF_Chimera
Academic chemistry journal published by MDPI
Molecules is a peer-reviewed open access scientific journal that focuses on all aspects of chemistry and materials science. It was established in March
Molecules_(journal)
Software for the visualisation of macromolecules
Comparison of software for molecular mechanics modeling Molecular graphics Molecule editor List of free and open-source software packages Roger Sayle and E. James
RasMol
Computer simulations to discover and understand chemical properties
method for analyzing the physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a fixed period of time, giving
Molecular_dynamics
systems List of open-source bioinformatics software Molecular graphics Molecule editor O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA
List of molecular graphics systems
List_of_molecular_graphics_systems
Comparison of nucleic acid simulation software Molecular design software Molecule editor Carbon nanotube Boron nitride nanotube Graphene Huhtala, Maria; Kuronen
List of software for nanostructures modeling
List_of_software_for_nanostructures_modeling
software for molecular mechanics modeling Molecular design software Molecule editor Abalone A.P.Lyubartsev, A.Laaksonen (2000). "MDynaMix - A scalable
Ascalaph_Designer
Comparison of software for molecular mechanics modeling Blue Obelisk Molecule editor List of free and open-source software packages The Blue Obelisk-Interoperability
JOELib
Computational chemistry software package
expert system XDrawChem — 2D drawing program, also based on Open Babel Molecule editor Avogadro (software) "[ViewVC] Annotation of: ghemical/trunk/CHANGES"
Ghemical
Using graphics processing units for molecular simulations
chemistry and solid state physics software Molecular design software Molecule editor Simulated reality Stone JE, Phillips JC, Freddolino PL, Hardy DJ, Trabuco
Molecular_modeling_on_GPUs
Dutch macromolecular computational program
packages, including YASARA and Jmol. List of molecular graphics systems Molecule editor Official website "WHAT IF homepage". Retrieved 21 February 2022. Vriend
WHAT_IF_software
graphics Molecular mechanics Molecular dynamics Molecular design software Molecule editor Quantum chemistry computer programs List of molecular graphics systems
Comparison of nucleic acid simulation software
Comparison_of_nucleic_acid_simulation_software
is freely available for academic and non-commercial use. MDL Chime Molecule editor Dalby, Arthur; Nourse, James G.; Hounshell, W. Douglas; Gushurst, Ann
ISIS/Draw
Computer graphics
physical simulations Molecular geometry – Study of the 3D shapes of molecules Molecule editor – Program for simulating chemical structures Software Molecular
Molecular_graphics
Spartan'24 Q-Chem quantum chemistry software Molecular design software Molecule editor Comparison of software for molecular mechanics modeling List of software
Spartan_(chemistry_software)
Software platform for 3D and 4D data visualization
Advanced tools for the visualization of molecule models Hardware-accelerated volume rendering Powerful molecule editor Specific tools for complex molecular
Amira_(software)
Academic journal
factor of 8.489. The most cited papers are those on a cross-platform molecule editor and visualizer called Avogadro, which has been cited more than 7400
Journal_of_Cheminformatics
Computational chemistry software program
(2012) Quantum chemistry computer programs Molecular design software Molecule editor Comparison of software for molecular mechanics modeling List of software
TeraChem
for molecular mechanics modeling List of molecular graphics systems Molecule editor Molecular modelling Molecular graphics Molecular dynamics Molecular
Sirius_visualization_software
Software for modelling molecules
Ascalaph Designer BOSS (molecular mechanics) CHARMM GROMACS MacroModel Molecule editor Molecular modelling Molecular design software NAMD Tinker (software)
MDynaMix
Intermediate energetic state within a dynamical system
[citation needed] Adenosine triphosphate (ATP) is a highly metastable molecule, colloquially described as being "full of energy" that can be used in many
Metastability
Computer program
prediction software Molecular design software Molecular modelling Molecule editor Abalone (molecular mechanics) Ascalaph Designer CHARMM GROMACS MDynaMix
MacroModel
Compact notation for chemical compounds
proportions of atoms that constitute a particular chemical compound or molecule, using chemical element symbols, numbers, and sometimes also other symbols
Chemical_formula
Chemistry based on quantum physics
mechanics to chemical systems to predict physical and chemical properties of molecules and materials. Calculations, which involve calculating electronic wave
Quantum_chemistry
Distributed computing project simulating protein folding
mechanics modeling Molecular modeling on GPUs SETI@home Storage@home Molecule editor Volunteer computing World Community Grid Julia Evangelou Strait (February
Folding@home
1986 video game
Molecule Man is an isometric 3D action-adventure video game released by Mastertronic in 1986 for 8-bit home computers. A level editor is included enabling
Molecule_Man_(video_game)
American biochemist and inventor (born 1957)
substantially developed in the book Fluorescent Chemosensors for Ion and Molecule Recognition edited by Czarnik and co-authored with other scientists. The
Anthony_Czarnik
Comparison of nucleic acid simulation software Molecular design software Molecule editor www.molsoft.com Needs, R.J.; Towler, M.D.; Drummond, N.D.; Ríos, P
List of software for Monte Carlo molecular modeling
List_of_software_for_Monte_Carlo_molecular_modeling
Academic journal
Blood Cells, Molecules and Diseases is a peer-reviewed medical journal covering hematology. It was established in 1975 as Blood Cells and obtained its
Blood Cells, Molecules and Diseases
Blood_Cells,_Molecules_and_Diseases
TIP4P, and TIP5P water models Molecular modelling Molecular graphics Molecule editor Molecular design software List of software for Monte Carlo molecular
BOSS_(molecular_mechanics)
Chemical compound
as a methane molecule, whose four hydrogen atoms are each replaced with a different halogen atom. As the mirror images of this molecule are not superimposable
Bromochlorofluoroiodomethane
Marvel Comics fictional character
first, he was changed to a Cosmic Cube that was incomplete because of the Molecule Man. The Illuminati suggested he was a mutant-Inhuman hybrid. Finally,
Beyonder
2020 video game by Media Molecule
Dreams is a 2020 game creation system video game developed by Media Molecule and published by Sony Interactive Entertainment for the PlayStation 4. Players
Dreams_(video_game)
Free online crowdsourced encyclopedia
RNA Biology launched a new section for descriptions of families of RNA molecules and requires authors who contribute to the section to also submit a draft
Wikipedia
Puzzle platform video game series
platform video game series created and produced by British developer Media Molecule and published by Sony Interactive Entertainment. Most games in the series
LittleBigPlanet
2008 video game for the PlayStation 3
LittleBigPlanet is a 2008 platform video game developed by Media Molecule and published by Sony Computer Entertainment for the PlayStation 3. It is the
LittleBigPlanet (2008 video game)
LittleBigPlanet_(2008_video_game)
"Dodecahedrane". pubchem.ncbi.nlm.nih.gov. Retrieved 2018-07-28. "'Olympic rings' molecule olympicene in striking image". BBC Online. 27 May 2012. Retrieved 28 May
List of chemical compounds with unusual names
List_of_chemical_compounds_with_unusual_names
Intelligence of machines
example, machine-learning AI is able to design tens of thousands of toxic molecules in a matter of hours. Economists have frequently highlighted the risks
Artificial_intelligence
Charts of molecules
Periodic systems of molecules are charts of molecules similar to the periodic table of the elements. Construction of such charts was initiated in the
Periodic systems of small molecules
Periodic_systems_of_small_molecules
Chemical compounds with the same molecular formula but different atomic arrangements
In chemistry, isomers are molecules or polyatomic ions with an identical molecular formula – that is, the same number of atoms of each element – but distinct
Isomer
American neuroscientist (1933–2022)
activate specific sites on the receptors to encode the identity of the odor molecule. A new appreciation of the human sense of smell suggested a new focus on
Gordon_M._Shepherd
DNA sequences into complex small‐molecule and polymer products of multistep organic synthesis. The DNA base editors, developed at Harvard University under
DNA-templated organic synthesis
DNA-templated_organic_synthesis
Video game engine developed by Epic Games
as a basis for a virtual reality tool to explore pharmaceutical drug molecules in collaboration with other researchers, as a virtual environment to explore
Unreal_Engine
which one or more electrons are removed from an atom or molecule, leaving the atom or molecule as a positively charged ion (cation). Each type of radiation
History of radiation protection
History_of_radiation_protection
2011 puzzle-platform game
LittleBigPlanet 2 is a 2011 puzzle-platform video game developed by Media Molecule and published by Sony Computer Entertainment for the PlayStation 3. It
LittleBigPlanet_2
Organochloride known as an insecticide
devastation of her local bird population after DDT spraying. William Shawn, editor of The New Yorker, urged her to write a piece on the subject, which developed
DDT
Japanese art of paper folding
gaps or overlaps. In origami tessellations, pleats are used to connect molecules such as twist folds together in a repeating fashion. During the 1960s
Origami
LaTeX package for drawing chemical structures
methane molecule: \chemfig{C(-[:0]H)(-[:90]H)(-[:180]H)(-[:270]H)} Chemistry portal Free and open-source software portal Comparison of TeX editors Computational
Chemfig
German-born theoretical physicist (1879–1955)
showed that Brownian movement can be construed as firm evidence that molecules exist. His research in 1903 and 1904 was mainly concerned with the effect
Albert_Einstein
Storyline by Marvel Comics
reality by detonating that reality's Molecule Man. Doom, Strange, and the Earth-616 Molecule Man had gathered Molecule Men from across the multiverse and
Secret_Wars_(2015_comic_book)
American actor (born 1947)
"'Marvel's Moon Girl and Devil Dinosaur': Edward James Olmos Guest Stars as Molecule Man in Season 2". www.marvel.com. Retrieved December 1, 2023. Wikiquote
Edward_James_Olmos
American animated superhero comedy television series
especially after a multiversal encounter with a powerful alien villain named Molecule Man, she must decide if the cost of keeping her identity a secret is worth
Moon_Girl_and_Devil_Dinosaur
2023 film by Christopher Nolan
forced perspective. Visualizations of the interactions between atoms, molecules and energy waves, as well as the depiction of stars, black holes and supernovas
Oppenheimer_(film)
Current Status. In Targeting Protein-Protein Interactions by Small Molecules. Editors C. Sheng and G. I. Georg; Springer Nature Singapore; 2018, Chapter
Gunda_Georg
American science fiction television series
Production location Toronto, Canada Cinematography Tommy Maddox-Upshaw Editor Jon Dudkowski Running time 60–75 minutes Production companies Secret Hideout
Star_Trek:_Starfleet_Academy
in Sacaton, Arizona; Raymond Dwek researched glycobiology, how sugar molecules attached to the surface of cells; Tom Rademacher found that arthritis
List_of_Equinox_episodes
the role of frontier orbitals in chemical reactions, specifically that molecules share loosely bonded electrons which occupy the frontier orbitals, that
History of science and technology in Japan
History_of_science_and_technology_in_Japan
(June 29, 2020). "The Podcast: Naughty Dog's Neil Druckmann And Media Molecule's Siobhan Reddy Join Talking Games With Reggie And Harold!". The New York
Development of The Last of Us Part II
Development_of_The_Last_of_Us_Part_II
Fictional video game character
was jointly created by the founding members of British game studio Media Molecule. Scottish composer Kenneth Young provided the vocal effects for the character
Sackboy
2023 video game
lowly burglar who, through an accident, gained the ability to turn into molecules of sand and manipulate them at will; Curt Connors / Lizard (Mark Whitten)
Marvel's_Spider-Man_2
1984–1985 Marvel Comics limited series
Doctor Octopus, the Enchantress, Kang the Conqueror, Klaw, the Lizard, the Molecule Man, Titania, Ultron, Volcana, and the Wrecking Crew. The cosmic entity
Secret_Wars
Expression of symbolic information
specifying that each molecule consists of two hydrogen (H) atoms and one oxygen (O) atom. Similarly, O− 3 denotes an ozone molecule consisting of three
Formula
American film series
no one more English than an Englishman who no longer lives there. Every molecule of British culture that came across the Atlantic was tasted and worshipped
Austin_Powers
involved in striated muscle formation. In nature, DNA molecules can be much bigger than protein molecules and therefore potentially be referred to with much
Longest_word_in_English
Wednesday". Detroit Free Press. November 4, 1990. p. 55, TV Book. "Guest Editors' Introduction". Canadian Journal of Communication. 17 (1). 1992. Retrieved
List of The Nature of Things episodes
List_of_The_Nature_of_Things_episodes
AI research laboratory
predicting the interactions of proteins with DNA, RNA, and various other molecules. In a particular benchmark test on the problem of DNA interactions, AlphaFold3's
Google_DeepMind
Form of electromagnetic radiation
is emitted or absorbed by molecules when changing rotational-vibrational movements. It excites vibrational modes in a molecule through a change in the dipole
Infrared
MOLECULE EDITOR
MOLECULE EDITOR
Girl/Female
African, Bengali, Gujarati, Hindu, Indian, Kannada, Kenyan, Malayalam, Marathi, Sanskrit, Sindhi, Tamil, Telugu
Small; Atom; Black; Molecule; Seed
Surname or Lastname
English and French
English and French : nickname for a lighthearted or cheerful person, from Middle English, Old French gai. In Middle English the term could also mean ‘wanton’, ‘lascivious’ and this sense may lie behind the surname in some instances.English (of Norman origin) : habitational name from places in Normandy called Gaye, from an early proprietor bearing a Germanic personal name cognate with Wade.probably from the Catalan personal name Gai (Latin Gaius), or in some cases a nickname from Catalan gay ‘cheerful’.Variant of German Gau.North German : from a Frisian personal name Gay.A Congregational clergyman and one of the forerunners of the Unitarian movement in New England, Ebenezer Gay (1696–1787) was born in Dedham, MA, which had been founded by his grandfather, John Gay, who came to America from Wiltshire, England, about 1630 and settled in Watertown, MA. Ebenezer’s great-grandson Howard was editor of the American Anti-Slavery Standard.
Surname or Lastname
English
English : unexplained.Nicholas Wyeth emigrated from Suffolk, England to Cambridge, MA, before 1645. John Wyeth (1770–1858) was born in Cambridge and became a prominent publisher and editor in Harrisburg, PA.
Boy/Male
Finnish, Indian, Sanskrit
Molecule; Particle; Earth; Born of Dust
MOLECULE EDITOR
MOLECULE EDITOR
Girl/Female
Gujarati, Hindu, Indian, Kannada, Marathi, Sanskrit, Telugu, Traditional
Nature and Self Conjoined; Goddess Durga
Female
French
Feminine form of French L�on, LÉONE means "lion."
Boy/Male
Indian, Sanskrit
Wearing a Plait of Hair as a Garment
Male
French
French form of German Yvo, YVES means "yew tree." Yvon shares the same etymology.
Surname or Lastname
English
English : unexplained. If it survives at all in England, the name is now very rare there.Muslim : unexplained.
Surname or Lastname
English
English : from French bélier ‘ram’, hence a nickname for someone thought to resemble a ram in some way or possibly a metonymic occupational name for a shepherd.English : variant spelling of Beller.
Girl/Female
Muslim
Mighty
Girl/Female
Indian
Pure; Natural
Boy/Male
Tamil
Polite
Girl/Female
Arabic, Australian, Islamic, Muslim, Pakistani, Portuguese, Russian, Urdu
Hope
MOLECULE EDITOR
MOLECULE EDITOR
MOLECULE EDITOR
MOLECULE EDITOR
MOLECULE EDITOR
a.
Containing two atoms or equivalents of carbon in the molecule.
n.
A chloride having five atoms of chlorine in each molecule.
n.
An ultimate particle of matter not necessarily indivisible; a molecule.
n.
A selenide containing two atoms of selenium in each molecule.
adv.
With molecules; in the manner of molecules.
n.
The state of consisting of molecules; the state or quality of being molecular.
n.
One of the very small invisible particles of which all matter is supposed to consist.
n.
Butyl; -- so called from the four carbon atoms in the molecule.
n.
A minute particle; an atom; a molecule.
n.
The smallest part of any substance which possesses the characteristic properties and qualities of that substance, and which can exist alone in a free state.
n.
A chloride having three atoms of chlorine in the molecule.
a.
Between molecules; situated, or acting, between the molecules of bodies.
a.
Having six atoms in the molecule.
a.
Having two atoms or equivalents of calcium to the molecule.
n.
A group of atoms so united and combined by chemical affinity that they form a complete, integrated whole, being the smallest portion of any particular compound that can exist in a free state; as, a molecule of water consists of two atoms of hydrogen and one of oxygen. Cf. Atom.
a.
Pertaining to, connected with, produced by, or consisting of, molecules; as, molecular forces; molecular groups of atoms, etc.
n.
Butane, each molecule of which has four carbon atoms.
a.
Having five atoms in the molecule.
n.
A small crustacean with one median eye.
n.
Butylene; -- so called from the four carbon atoms in the molecule.