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RFAM

  • Rfam
  • Online database of non-coding RNA and other RNA elements

    Rfam is a database containing information about non-coding RNA (ncRNA) families and other structured RNA elements. It is an annotated, open access database

    Rfam

    Rfam

  • CRISPR
  • Family of DNA sequences found in prokaryotic organisms

    Secondary structure taken from the Rfam database. Family RF01315. CRISPR-DR5: Secondary structure taken from the Rfam database. Family RF011318. CRISPR-DR6:

    CRISPR

    CRISPR

    CRISPR

  • Stockholm format
  • File format for biological sequence alignments

    Stockholm format is a multiple sequence alignment format used by Pfam, Rfam and Dfam, to disseminate protein, RNA and DNA sequence alignments. The alignment

    Stockholm format

    Stockholm_format

  • Alex Bateman
  • British bioinformatician (born 1972)

    has led the development of the Pfam biological database and introduced the Rfam database of RNA families. He has also been involved in the use of Wikipedia

    Alex Bateman

    Alex Bateman

    Alex_Bateman

  • Retroviral psi packaging element
  • RNA family

    1128/JVI.01479-07. PMC 2258995. PMID 18160437. Page for HIV-1_DIS at Rfam Page for HIV-1_SD at Rfam Page for HIV-1 SL3 at Rfam Page for HIV-1 SL4 at Rfam

    Retroviral psi packaging element

    Retroviral psi packaging element

    Retroviral_psi_packaging_element

  • Sean Eddy
  • American professor at Harvard University

    projects include the use of Hidden Markov models in HMMER, Infernal Pfam and Rfam. Eddy graduated June 1982 from Marion Center Area High School. He then completed

    Sean Eddy

    Sean Eddy

    Sean_Eddy

  • Hairy RNA localisation element (HLE)
  • RNA family

    The EMBO Journal. 22 (10): 2484–2494. doi:10.1093/emboj/cdg230. PMC 155988. PMID 12743042. Page for Hairy RNA localisation element (HLE) at Rfam v t e

    Hairy RNA localisation element (HLE)

    Hairy RNA localisation element (HLE)

    Hairy_RNA_localisation_element_(HLE)

  • Rous sarcoma virus primer binding site
  • RNA family

    genome". BMC Biology. 2: 8. doi:10.1186/1741-7007-2-8. PMC 428589. PMID 15153244. Page for Rous sarcoma virus (RSV) primer binding site (PBS) at Rfam v t e

    Rous sarcoma virus primer binding site

    Rous sarcoma virus primer binding site

    Rous_sarcoma_virus_primer_binding_site

  • Pfam
  • Database of protein families

    centralisation of updates, and grouping with other Xfam projects such as Rfam, TreeFam, iPfam and others, whilst retaining critical resilience provided

    Pfam

    Pfam

    Pfam

  • Signal recognition particle RNA
  • RNA family

    Wayback Machine Rfam entry for Metazoan type signal recognition particle RNA Rfam entry for Bacterial small signal recognition particle RNA Rfam entry for Bacterial

    Signal recognition particle RNA

    Signal recognition particle RNA

    Signal_recognition_particle_RNA

  • Enteroviral 3′ UTR element
  • RNA family

    3'UTR". Nucleic Acids Research. 27 (2): 485–490. doi:10.1093/nar/27.2.485. PMC 148204. PMID 9862969. Page for Enteroviral 3′ UTR element at Rfam v t e

    Enteroviral 3′ UTR element

    Enteroviral 3′ UTR element

    Enteroviral_3′_UTR_element

  • MALAT1
  • Non-coding RNA in the species Homo sapiens

    Machine Page for Metastasis associated lung adenocarcinoma transcript 1 at Rfam Relevance of MALAT1 in single-cell RNA sequencing data Archived 2023-12-08

    MALAT1

    MALAT1

    MALAT1

  • ZEB2-AS1
  • pgen.1000459. PMC 2667263. PMID 19390609. Page for ZEB2-AS1-1 at Rfam Page for ZEB2-AS1-2 at Rfam Page for ZEB2-AS1-3 at Rfam Page for ZEB2-AS1-4 at Rfam

    ZEB2-AS1

    ZEB2-AS1

    ZEB2-AS1

  • HOTAIR
  • Gene found in humans

    1 at Rfam Page for HOTAIR conserved region 2 at Rfam Page for HOTAIR conserved region 3 at Rfam Page for HOTAIR intron conserved region 4 at Rfam Page

    HOTAIR

    HOTAIR

    HOTAIR

  • Mason-Pfizer monkey virus
  • Species of virus

    and sequence conservation of MPMV_package Identifiers Symbol MPMV_package Rfam RF00459 Other data RNA type Cis-reg Domain(s) Eukaryota; Viruses SO SO:0000233

    Mason-Pfizer monkey virus

    Mason-Pfizer_monkey_virus

  • Tryptophan operon leader
  • RNA family

    TRAP regulatory protein". J Biol Chem. 277 (12): 10608–10613. doi:10.1074/jbc.M111813200. PMID 11786553. Page for Tryptophan operon leader at Rfam v t e

    Tryptophan operon leader

    Tryptophan operon leader

    Tryptophan_operon_leader

  • Riboswitch s0670
  • RNA family

    however s0670 and several sequences in this alignment do not match any Rfam family. Downstream genes are either S-adenosylmethionine synthetase (most

    Riboswitch s0670

    Riboswitch s0670

    Riboswitch_s0670

  • Crinivirus
  • Genus of viruses

    Closteroviridae Viralzone: Crinivirus Rfam entry for 3'-terminal pseudoknot in SPCSV Rfam entry for 3'-terminal pseudoknot of CuYV/BPYV Rfam entry for 3'-terminal pseudoknot

    Crinivirus

    Crinivirus

    Crinivirus

  • Human accelerated region 1
  • Segment of chromosome 20 in humans

    and Chimps, Scientific American, 17 August 2006 Page for Human accelerated region 1F at Rfam UCSC genome browser page for Human accelerated region 1F

    Human accelerated region 1

    Human accelerated region 1

    Human_accelerated_region_1

  • Small nucleolar RNA
  • Class of small RNA molecules

    Database The yeast snoRNA database human snoRNA expression pattern Rfam page for C/D box snoRNAs Rfam page for H/ACA box snoRNAs Rfam page for scaRNA snoRNAs

    Small nucleolar RNA

    Small_nucleolar_RNA

  • Histone 3′ UTR stem-loop
  • RNA family

    1021/bi2018255. PMC 3328597. PMID 22439849. Page for Histone 3′ UTR stem-loop at Rfam Transterm page for Histone 3′ stem loop UTRSite page for Histone 3′UTR stem-loop

    Histone 3′ UTR stem-loop

    Histone 3′ UTR stem-loop

    Histone_3′_UTR_stem-loop

  • S-element
  • RNA family

    Microbiology. 54 (5): 1431–1444. doi:10.1111/j.1365-2958.2004.04366.x. hdl:10651/42013. PMID 15554980. S2CID 41843742. Page for S-element at Rfam v t e

    S-element

    S-element

    S-element

  • Ribonuclease P
  • Class of enzymes

    Nuclear RNase P at Rfam Page for Archaeal RNase P at Rfam Page for Bacterial RNase P class A at Rfam Page for Bacterial RNase P class B at Rfam RNase+P at the

    Ribonuclease P

    Ribonuclease P

    Ribonuclease_P

  • Twister ribozyme
  • Ribozyme capable of self-cleavage

    sequence conservation of Type-P5 twister ribozyme Identifiers Symbol Twister-P5 Rfam RF02684 Other data RNA type Gene; Ribozyme GO GO:0003824 SO SO:0000374 PDB

    Twister ribozyme

    Twister ribozyme

    Twister_ribozyme

  • Listeria monocytogenes non-coding RNA
  • RNA family

    B-dependent small noncoding RNA in Listeria monocytogenes". J Bacteriol. 190 (18): 6264–6270. doi:10.1128/JB.00740-08. PMC 2546787. PMID 18621897. Rfam database

    Listeria monocytogenes non-coding RNA

    Listeria monocytogenes non-coding RNA

    Listeria_monocytogenes_non-coding_RNA

  • Iron response element
  • RNA family

    other mRNAs do not have any support for this bulged U. Consequently, two RFAM models have been created for the IRE—one with a bulged U and one without

    Iron response element

    Iron response element

    Iron_response_element

  • HgcF RNA
  • RNA family

    sites in ribosomal RNAs". Nucleic Acids Research. 36 (8): 2459–2475. doi:10.1093/nar/gkn077. PMC 2377435. PMID 18304947. Page for HgcF RNA at Rfam v t e

    HgcF RNA

    HgcF RNA

    HgcF_RNA

  • Vibrio regulatory RNA of OmpA
  • RNA family

    Infect. Immun. 74 (4): 2022–2030. doi:10.1128/IAI.74.4.2022-2030.2006. PMC 1418910. PMID 16552031. Page for Vibrio regulatory RNA of OmpA at Rfam v t e

    Vibrio regulatory RNA of OmpA

    Vibrio regulatory RNA of OmpA

    Vibrio_regulatory_RNA_of_OmpA

  • L17 ribosomal protein leader
  • RNA family

    and archaea". BMC Microbiology. 20 (130): 130. doi:10.1186/s12866-020-01823-6. PMC 7247131. PMID 32448158. Page for Ribosomal L17 leader at Rfam v t e

    L17 ribosomal protein leader

    L17 ribosomal protein leader

    L17_ribosomal_protein_leader

  • MiR-146
  • Family of microRNA precursors

    (Suppl 2): ii90-5. doi:10.1136/annrheumdis-2012-202203. PMC 7664460. PMID 23253933. S2CID 35063994. microRNA (miRNA) Page for microRNA mir-146 at Rfam

    MiR-146

    MiR-146

    MiR-146

  • Asd RNA motif
  • Structure in lactic-acid bacterium RNA

    Scientific Reports. 7 (1) 12241. Bibcode:2017NatSR...712241P. doi:10.1038/s41598-017-12507-z. PMC 5613026. PMID 28947755. Page for asd RNA at Rfam v t e

    Asd RNA motif

    Asd RNA motif

    Asd_RNA_motif

  • C0299 RNA
  • RNA family

    oligonucleotide probe arrays". Nucleic Acids Research. 30 (17): 3732–3738. doi:10.1093/nar/gkf505. PMC 137427. PMID 12202758. Page for C0299 RNA at Rfam v t e

    C0299 RNA

    C0299 RNA

    C0299_RNA

  • 16S ribosomal RNA
  • RNA component

    bacteria and archaea. From Woese 1987. Identifiers Symbol SSU_rRNA_bacteria Rfam RF00177 Other data RNA type Gene; rRNA Domain Bacteria PDB structures PDBe

    16S ribosomal RNA

    16S ribosomal RNA

    16S_ribosomal_RNA

  • Hammerhead ribozyme
  • RNA family

    type I at Rfam Page for Hammerhead type II at Rfam Page for Hammerhead type III at Rfam Page for Hammerhead HH9 at Rfam Page for Hammerhead HH10 at Rfam

    Hammerhead ribozyme

    Hammerhead ribozyme

    Hammerhead_ribozyme

  • C-sis internal ribosome entry site (IRES)
  • RNA family

    Cellular Biology. 19 (8): 5429–5440. doi:10.1128/mcb.19.8.5429. PMC 84385. PMID 10409733. Page for c-sis internal ribosome entry site (IRES) at Rfam v t e

    C-sis internal ribosome entry site (IRES)

    C-sis internal ribosome entry site (IRES)

    C-sis_internal_ribosome_entry_site_(IRES)

  • Australian National EL class
  • Class of diesel locomotives

    8013-07/90-103 Aug 1990 Stored Off Hire, Islington Rail First Asset Management RFAM silver & blue N/A Was Listed For sale in Islington, Future Unknown EL52 Light

    Australian National EL class

    Australian National EL class

    Australian_National_EL_class

  • ELife
  • Open-access scientific journal

    Consortium Human Genome Project Malawi Liverpool Wellcome Trust MEROPS Pfam Rfam UK Biobank Wellcome Collection Wellcome Genome Campus Wellcome Library WormBase

    ELife

    ELife

    ELife

  • NRON
  • RNA family

    mouse full-length cDNA collection". Genome Research. 13 (6B): 1301–1306. doi:10.1101/gr.1011603. PMC 403720. PMID 12819127. Page for NRON at Rfam v t e

    NRON

    NRON

    NRON

  • SroD RNA
  • Non-coding RNA

    transcriptional output in bacteria". Nucleic Acids Research. 31 (22): 6435–6443. doi:10.1093/nar/gkg867. PMC 275561. PMID 14602901. Page for sroD RNA at Rfam v t e

    SroD RNA

    SroD RNA

    SroD_RNA

  • SuhB
  • RNA family

    Applied and Environmental Microbiology. 76 (1): 110–118. doi:10.1128/aem.01846-09. ISSN 0099-2240. PMC 2798658. PMID 19897762. Page for suhB at Rfam v t e

    SuhB

    SuhB

    SuhB

  • Human Genome Project
  • International scientific research project (1990–2003)

    Consortium Human Genome Project Malawi Liverpool Wellcome Trust MEROPS Pfam Rfam UK Biobank Wellcome Collection Wellcome Genome Campus Wellcome Library WormBase

    Human Genome Project

    Human Genome Project

    Human_Genome_Project

  • Cyclic di-GMP-II riboswitch
  • RNA family

    (5993): 845–848. Bibcode:2010Sci...329..845L. doi:10.1126/science.1190713. PMC 4538695. PMID 20705859. Page for Cyclic di-GMP-II riboswitch at Rfam v t e

    Cyclic di-GMP-II riboswitch

    Cyclic di-GMP-II riboswitch

    Cyclic_di-GMP-II_riboswitch

  • Bamboo mosaic potexvirus (BaMV) cis-regulatory element
  • RNA family

    Virology. 315 (2): 415–424. doi:10.1016/S0042-6822(03)00560-9. PMID 14585345. Page for Bamboo mosaic potexvirus (BaMV) cis-regulatory element at Rfam v t e

    Bamboo mosaic potexvirus (BaMV) cis-regulatory element

    Bamboo mosaic potexvirus (BaMV) cis-regulatory element

    Bamboo_mosaic_potexvirus_(BaMV)_cis-regulatory_element

  • Epstein–Barr virus–encoded small RNAs
  • RNA family

    herpesvirus 1 small nucleolar RNA at Rfam Page for EBER1 at Rfam Page for v-snoRNA1 at Rfam Page for IRES_EBNA at Rfam Epstein–Barr virus stable intronic

    Epstein–Barr virus–encoded small RNAs

    Epstein–Barr virus–encoded small RNAs

    Epstein–Barr_virus–encoded_small_RNAs

  • Infectious bronchitis virus D-RNA
  • RNA family

    The Journal of General Virology. 81 (Pt 3): 791–801. doi:10.1099/0022-1317-81-3-791. PMID 10675417. Page for Infectious bronchitis virus D-RNA at Rfam

    Infectious bronchitis virus D-RNA

    Infectious bronchitis virus D-RNA

    Infectious_bronchitis_virus_D-RNA

  • Coronavirus 5′ UTR
  • Consensus secondary structure and sequence conservation of aCoV-5UTR (Rfam RF03116).

    Coronavirus 5′ UTR

    Coronavirus_5′_UTR

  • Epstein–Barr virus nuclear-antigen internal ribosomal entry site
  • RNA family

    PMID 12555070. Page for IRES_EBNA at Rfam Page for Human herpesvirus 1 small nucleolar RNA at Rfam Page for EBER1 at Rfam Page for v-snoRNA1 at Rfam

    Epstein–Barr virus nuclear-antigen internal ribosomal entry site

    Epstein–Barr virus nuclear-antigen internal ribosomal entry site

    Epstein–Barr_virus_nuclear-antigen_internal_ribosomal_entry_site

  • SerC leader
  • RNA family

    motifs in alpha-proteobacteria". Genome Biology. 6 (8): R70. doi:10.1186/gb-2005-6-8-r70. PMC 1273637. PMID 16086852. Page for serC leader at Rfam v t e

    SerC leader

    SerC leader

    SerC_leader

  • ArcZ RNA
  • RNA family

    virulence regulatory function". BMC Genomics. 15 (1): 414. doi:10.1186/1471-2164-15-414. ISSN 1471-2164. PMC 4070566. PMID 24885615. Page for SraH RNA at Rfam

    ArcZ RNA

    ArcZ RNA

    ArcZ_RNA

  • Wellcome Photography Prize
  • Consortium Human Genome Project Malawi Liverpool Wellcome Trust MEROPS Pfam Rfam UK Biobank Wellcome Collection Wellcome Genome Campus Wellcome Library WormBase

    Wellcome Photography Prize

    Wellcome_Photography_Prize

  • L-myc internal ribosome entry site (IRES)
  • RNA family

    ribosome entry". RNA. 10 (2): 287–298. doi:10.1261/rna.5138804. PMC 1370540. PMID 14730027. Page for L-myc internal ribosome entry site (IRES) at Rfam v t e

    L-myc internal ribosome entry site (IRES)

    L-myc internal ribosome entry site (IRES)

    L-myc_internal_ribosome_entry_site_(IRES)

  • SL2 RNA
  • RNA family

    RNA". Molecular and Cellular Biology. 20 (18): 6659–6667. doi:10.1128/MCB.20.18.6659-6667.2000. PMC 86170. PMID 10958663. Page for SL2 RNA at Rfam v t e

    SL2 RNA

    SL2 RNA

    SL2_RNA

  • FMN riboswitch
  • Highly conserved RNA element

    Bibcode:2015Natur.526..672H. doi:10.1038/nature15542. ISSN 0028-0836. PMID 26416753. Retrieved 2017-02-02. Page for FMN riboswitch (RFN element) at Rfam

    FMN riboswitch

    FMN riboswitch

    FMN_riboswitch

  • TPP riboswitch
  • RNA secondary structure

    3389/fchem.2014.00053. PMC 4112796. PMID 25121086. Page for TPP riboswitch (THI element) at Rfam PDB entry for the TPP riboswitch tertiary structure v t e

    TPP riboswitch

    TPP riboswitch

    TPP_riboswitch

  • F-plasmid
  • Sequence of bacterial DNA

    interactions". The EMBO Journal. 22 (23): 6346–6355. doi:10.1093/emboj/cdg607. PMC 291848. PMID 14633993. Page for FinP at Rfam Page for traJ 5' UTR at Rfam

    F-plasmid

    F-plasmid

  • Teg147
  • RNA family

    1371/journal.pone.0010725. PMC 2873960. PMID 20505759.{{cite journal}}: CS1 maint: multiple names: authors list (link) Page for Teg147 RNA at Rfam v t e

    Teg147

    Teg147

    Teg147

  • Turnip crinkle virus (TCV) core promoter hairpin (Pr)
  • RNA element

    7813–7817. doi:10.1128/JVI.78.14.7813-7817.2004. PMC 434097. PMID 15220455. Page for Turnip crinkle virus (TCV) core promoter hairpin (Pr) at Rfam v t e

    Turnip crinkle virus (TCV) core promoter hairpin (Pr)

    Turnip crinkle virus (TCV) core promoter hairpin (Pr)

    Turnip_crinkle_virus_(TCV)_core_promoter_hairpin_(Pr)

  • Nanos 3′ UTR translation control element
  • RNA family

    translation". Mol. Cell. 5 (3): 457–467. doi:10.1016/S1097-2765(00)80440-2. PMID 10882131. Page for Nanos 3′ UTR translation control element at Rfam v t e

    Nanos 3′ UTR translation control element

    Nanos 3′ UTR translation control element

    Nanos_3′_UTR_translation_control_element

  • Regulatory region of repZ gene
  • RNA family

    The Journal of Biological Chemistry. 273 (19): 11815–11825. doi:10.1074/jbc.273.19.11815. PMID 9565606. Rfam entry for Regulatory region of repZ gene

    Regulatory region of repZ gene

    Regulatory region of repZ gene

    Regulatory_region_of_repZ_gene

  • Rail First Asset Management
  • Australian rolling stock leasing company

    and sold their share to DIF Capital Partners.[citation needed] In Jan 2021 RFAM took out a lease on the Goulburn Railway Workshops to maintain both its locomotive

    Rail First Asset Management

    Rail First Asset Management

    Rail_First_Asset_Management

  • L4 ribosomal protein leader
  • RNA family

    and archaea". BMC Microbiology. 20 (130): 130. doi:10.1186/s12866-020-01823-6. PMC 7247131. PMID 32448158. Page for Ribosomal L4 leader at Rfam v t e

    L4 ribosomal protein leader

    L4 ribosomal protein leader

    L4_ribosomal_protein_leader

  • Lacto-rpoB RNA motif
  • RNA family

    archaea and their metagenomes". Genome Biol. 11 (3) R31. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605. Page for Lacto-rpoB RNA at Rfam v t e

    Lacto-rpoB RNA motif

    Lacto-rpoB RNA motif

    Lacto-rpoB_RNA_motif

  • Rma A small RNA
  • RNA family

    secondary structure and sequence conservation of RmaA small RNA Identifiers Rfam RF02629 Other data Domain Bacteria GO GO:0005515,GO:2000145 SO SO:0000370

    Rma A small RNA

    Rma A small RNA

    Rma_A_small_RNA

  • Purine riboswitch
  • RNA family

    1073/pnas.0911209107. PMC 2840279. PMID 20133756. Page for Purine riboswitch at Rfam PDB entry for the adenosine riboswitch tertiary structure PDB entry for the

    Purine riboswitch

    Purine riboswitch

    Purine_riboswitch

  • FIE3 (ftz instability element 3′) element
  • RNA family

    Development. 21 (4): 444–451. doi:10.1016/j.gde.2011.03.002. PMC 3146975. PMID 21497082. Page for FIE3 (ftz instability element 3′) element at Rfam v t e

    FIE3 (ftz instability element 3′) element

    FIE3 (ftz instability element 3′) element

    FIE3_(ftz_instability_element_3′)_element

  • Mir-7 microRNA precursor
  • Precursor microRNA family

    1016/j.gep.2008.12.003. PMID 19135553. Page for mir-7 microRNA precursor at Rfam Purow, Benjamin (December 2008). "MIR7-1 (microRNA 7-1)". Atlas of Genetics

    Mir-7 microRNA precursor

    Mir-7 microRNA precursor

    Mir-7_microRNA_precursor

  • YdaO/yuaA leader
  • RNA structure in bacteria

    internally pseudo-dimeric RNA". EMBO J. 33 (22): 2692–2703. doi:10.15252/embj.201489209. PMC 4282576. PMID 25271255. Page for ydaO/yuaA leader at Rfam v t e

    YdaO/yuaA leader

    YdaO/yuaA leader

    YdaO/yuaA_leader

  • Small Cajal body specific RNA 15
  • RNA family

    2773–85. doi:10.1101/gad.1705308. PMC 2569885. PMID 18923076. Page for Small Cajal body specific RNA 15 at Rfam Entry for SCARNA45 at snoRNABase v t e

    Small Cajal body specific RNA 15

    Small Cajal body specific RNA 15

    Small_Cajal_body_specific_RNA_15

  • Human rhinovirus internal cis-acting regulatory element
  • RNA family

    1569–1584. doi:10.1017/S1355838298981006. PMC 1369726. PMID 9848654. Page for Human rhinovirus internal cis-acting regulatory element (CRE) at Rfam v t e

    Human rhinovirus internal cis-acting regulatory element

    Human rhinovirus internal cis-acting regulatory element

    Human_rhinovirus_internal_cis-acting_regulatory_element

  • U4 spliceosomal RNA
  • Non-coding RNA component of the spliceosome

    Caenorhabditis elegans". Nucleic Acids Res. 18 (9): 2633–2642. doi:10.1093/nar/18.9.2633. PMC 330746. PMID 2339054. Page for U4 spliceosomal RNA at Rfam

    U4 spliceosomal RNA

    U4 spliceosomal RNA

    U4_spliceosomal_RNA

  • DsrA RNA
  • Non-coding RNA

    doi:10.4161/rna.27100. PMC 3917986. PMID 24448230. Page for DsrA RNA at Rfam sRNATarBase page for DsrA interactions with hns sRNATarBase page for DsrA

    DsrA RNA

    DsrA RNA

    DsrA_RNA

  • DUF2815 RNA motif
  • RNA family

    structure and sequence conservation of DUF2815 RNA Identifiers Symbol DUF2815 Rfam RF03084 Other data RNA type Gene; sRNA SO SO:0001263 PDB structures PDBe

    DUF2815 RNA motif

    DUF2815 RNA motif

    DUF2815_RNA_motif

  • U98 small nucleolar RNA
  • RNA family

    20 (11): 2943–53. doi:10.1093/emboj/20.11.2943. PMC 125495. PMID 11387227. Page for U98 small nucleolar RNA at Rfam Entry for U98 at snoRNABase v t e

    U98 small nucleolar RNA

    U98 small nucleolar RNA

    U98_small_nucleolar_RNA

  • Iron stress repressed RNA
  • RNA family

    (14): 8241–8253. doi:10.1093/nar/gkae506. ISSN 1362-4962. PMC 11317140. PMID 38869061. Rfam entry for antisense RNA which regulates isiA expression v t e

    Iron stress repressed RNA

    Iron stress repressed RNA

    Iron_stress_repressed_RNA

  • John Sulston
  • British biologist and academic (1942–2018)

    Consortium Human Genome Project Malawi Liverpool Wellcome Trust MEROPS Pfam Rfam UK Biobank Wellcome Collection Wellcome Genome Campus Wellcome Library WormBase

    John Sulston

    John Sulston

    John_Sulston

  • Epstein–Barr virus small nucleolar RNA 1
  • RNA family

    PMID 20122292. Page for human herpesvirus 1 small nucleolar RNA at Rfam Page for EBER1 at Rfam Page for v-snoRNA1 at Rfam Page for IRES EBNA at Rfam

    Epstein–Barr virus small nucleolar RNA 1

    Epstein–Barr virus small nucleolar RNA 1

    Epstein–Barr_virus_small_nucleolar_RNA_1

  • Small nucleolar RNA SNORD42
  • RNA family

    2943. PMC 125495. PMID 11387227. Page for Small nucleolar RNA SNORD42 at Rfam Entry for SNORD42A at snoRNABase Entry for SNORD42B at snoRNABase v t e

    Small nucleolar RNA SNORD42

    Small nucleolar RNA SNORD42

    Small_nucleolar_RNA_SNORD42

  • IS061 RNA
  • RNA family

    transcription to mRNA fate". Nucleic Acids Research. 44 (6): 2577–2592. doi:10.1093/nar/gkv1302. PMC 4824073. PMID 26609136. Page for IS061 RNA at Rfam v t e

    IS061 RNA

    IS061 RNA

    IS061_RNA

  • Retron
  • RNA family

    PMC 10450171. PMID 37471041. Retrieved 6 July 2025. Page for Retron msr RNA at Rfam Mystery molecule in bacteria is revealed to be a guard, on: EurekAlert!,

    Retron

    Retron

    Retron

  • Regulatory region of repBA gene
  • RNA family

    plasmid". J. Bacteriol. 181 (6): 1811–1819. doi:10.1128/JB.181.6.1811-1819.1999. PMC 93579. PMID 10074073. Rfam entry for Regulatory region of repBA gene

    Regulatory region of repBA gene

    Regulatory region of repBA gene

    Regulatory_region_of_repBA_gene

  • YkkC-yxkD leader
  • Conserved RNA structure in bacteria

    359–363. doi:10.1021/acs.biochem.6b01271. ISSN 1520-4995. PMC 5315414. PMID 28001372. Page for ykkC-yxkD leader at Rfam Page for ykkC-III RNA at Rfam

    YkkC-yxkD leader

    YkkC-yxkD leader

    YkkC-yxkD_leader

  • Bovine leukaemia virus RNA packaging signal
  • RNA family

    Research Communications. 458 (3): 687–692. doi:10.1016/j.bbrc.2015.02.025. PMID 25686502. Page for Bovine leukaemia virus RNA packaging signal at Rfam

    Bovine leukaemia virus RNA packaging signal

    Bovine leukaemia virus RNA packaging signal

    Bovine_leukaemia_virus_RNA_packaging_signal

  • SECIS element
  • RNA sequence directing the translation of UGA codons as selenocysteines

    element 1 at Rfam Page for SECIS element 2 at Rfam Page for SECIS element 3 at Rfam Page for SECIS element 4 at Rfam Page for SECIS element 5 at Rfam

    SECIS element

    SECIS element

    SECIS_element

  • C0719 RNA
  • RNA family

    oligonucleotide probe arrays". Nucleic Acids Res. 30 (17): 3732–3738. doi:10.1093/nar/gkf505. PMC 137427. PMID 12202758. Page for C0719 RNA at Rfam v t e

    C0719 RNA

    C0719 RNA

    C0719_RNA

  • SAM riboswitch (S-box leader)
  • RNA family

    1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605. Page for SAM riboswitch (S box leader) at Rfam (a Wikipedia clone) PDB entry for the SAM riboswitch tertiary structure

    SAM riboswitch (S-box leader)

    SAM riboswitch (S-box leader)

    SAM_riboswitch_(S-box_leader)

  • Insertion sequence IS1222 ribosomal frameshifting element
  • RNA family

    3274–3277. doi:10.1128/JB.186.10.3274-3277.2004. PMC 400620. PMID 15126494. Page for Insertion sequence IS1222 ribosomal frameshifting element at Rfam v t e

    Insertion sequence IS1222 ribosomal frameshifting element

    Insertion sequence IS1222 ribosomal frameshifting element

    Insertion_sequence_IS1222_ribosomal_frameshifting_element

  • SucC RNA motif
  • RNA family

    bacteria, archaea and their metagenomes". Genome Biol. 11 (3): R31. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605. Page for sucC RNA at Rfam v t e

    SucC RNA motif

    SucC RNA motif

    SucC_RNA_motif

  • U6 spliceosomal RNA
  • Small nuclear RNA component of the spliceosome

    "The uRNA database". Nucleic Acids Research. 25 (1): 102–3. doi:10.1093/nar/25.1.102. PMC 146409. PMID 9016512. Page for U6 spliceosomal RNA at Rfam

    U6 spliceosomal RNA

    U6 spliceosomal RNA

    U6_spliceosomal_RNA

  • SAOUHSCs221
  • RNA family

    1093/nar/gkv584. PMC 4513863. PMID 26044710.{{cite journal}}: CS1 maint: multiple names: authors list (link) Page for SAOUHSCs221 antisense RNA at Rfam

    SAOUHSCs221

    SAOUHSCs221

    SAOUHSCs221

  • Small Cajal body specific RNA 24
  • RNA family

    105.7552. doi:10.1093/nar/gkj002. PMC 1347365. PMID 16381836. Page for Small Cajal body specific RNA 24 at Rfam Entry for SCARNA24 at snoRNABase v t e

    Small Cajal body specific RNA 24

    Small Cajal body specific RNA 24

    Small_Cajal_body_specific_RNA_24

  • PrfA thermoregulator UTR
  • RNA family

    thermosensation". Journal of Biophysics. 2008 602870. doi:10.1155/2008/602870. PMC 2814129. PMID 20130806. Page for PrfA thermoregulator UTR at Rfam v t e

    PrfA thermoregulator UTR

    PrfA thermoregulator UTR

    PrfA_thermoregulator_UTR

  • Hepatitis C virus internal ribosome entry site
  • RNA family

    Acids Research. 41 (18): 8706–8714. doi:10.1093/nar/gkt632. PMC 3794592. PMID 23873958. Page for Hepatitis C virus internal ribosome entry site at Rfam

    Hepatitis C virus internal ribosome entry site

    Hepatitis C virus internal ribosome entry site

    Hepatitis_C_virus_internal_ribosome_entry_site

  • Wellcome Sanger Institute
  • British genomics research institute

    elsewhere: MEROPS, a peptidase database Pfam, a protein family database Rfam, an RNA family database TreeFam, a database of phylogenetic trees for animal

    Wellcome Sanger Institute

    Wellcome_Sanger_Institute

  • Sxy 5′ UTR element
  • RNA family

    natural competence in Vibrio cholerae". Science. 310 (5755): 1824–1827. doi:10.1126/science.1120096. PMID 16357262. Rfam entry for sxy 5′ UTR element

    Sxy 5′ UTR element

    Sxy 5′ UTR element

    Sxy_5′_UTR_element

  • Transfer RNA-like structures
  • RNA sequences similar in structure to tRNA, found in plant virus genomes

    taken from the Rfam database. Family RF01075. Derived from Pseudobase PKB00138 PKB00164 TLS-PK2: Secondary structure taken from the Rfam database. Family

    Transfer RNA-like structures

    Transfer RNA-like structures

    Transfer_RNA-like_structures

  • Rous sarcoma virus
  • Species of virus

    Machine Rous+sarcoma+virus at the U.S. National Library of Medicine Medical Subject Headings (MeSH) Rfam entry for retroviral 3'UTR stability element

    Rous sarcoma virus

    Rous_sarcoma_virus

  • Enterovirus 5′ cloverleaf cis-acting replication element
  • RNA family

    (6): 1439–1448. doi:10.1093/emboj/20.6.1439. PMC 145522. PMID 11250909. Page for Enterovirus 5′ cloverleaf cis-acting replication element at Rfam v t e

    Enterovirus 5′ cloverleaf cis-acting replication element

    Enterovirus 5′ cloverleaf cis-acting replication element

    Enterovirus_5′_cloverleaf_cis-acting_replication_element

  • YbhL leader
  • RNA family

    motifs in alpha-proteobacteria". Genome Biol. 6 (8): R70. doi:10.1186/gb-2005-6-8-r70. PMC 1273637. PMID 16086852. Page for ybhL leader at Rfam v t e

    YbhL leader

    YbhL leader

    YbhL_leader

  • DIMPL
  • unknown function. DIMPL uses various sequence analysis resources, including: Rfam database, as a reference of known RNA families BLASTX search tool, to eliminate

    DIMPL

    DIMPL

  • Renin stability regulatory element (REN-SRE)
  • RNA family

    J. Biol. Chem. 278 (45): 44894–44903. doi:10.1074/jbc.M307782200. PMID 12933794. Page for Renin stability regulatory element (REN-SRE) at Rfam v t e

    Renin stability regulatory element (REN-SRE)

    Renin stability regulatory element (REN-SRE)

    Renin_stability_regulatory_element_(REN-SRE)

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Online names & meanings

  • Dalfon
  • Boy/Male

    Hebrew

    Dalfon

    Raindrop.

  • Triggya
  • Girl/Female

    Indian, Sanskrit

    Triggya

    The Enlightened

  • Lathiksha
  • Girl/Female

    Hindu, Indian

    Lathiksha

    Welcome

  • Daayini
  • Girl/Female

    Indian

    Daayini

    Giver

  • Telfer
  • Boy/Male

    French

    Telfer

    Works in iron.

  • Wim
  • Boy/Male

    Australian, British, Chinese, Dutch, English, French, German, Teutonic

    Wim

    Will-helmet; Strong Helmet; Will Helmet; Protect

  • Muhyi
  • Boy/Male

    Arabic, Muslim

    Muhyi

    One who Gives Life; Reviver

  • Darryll
  • Boy/Male

    American, Anglo, Australian, British, English, French

    Darryll

    Darling; Beloved; From Airelle

  • Roopal
  • Girl/Female

    Hindu, Indian

    Roopal

    Silver; Beautiful

  • Magdalena
  • Girl/Female

    American, Australian, British, Chinese, Czech, Czechoslovakian, Danish, Dutch, English, Finnish, French, German, Greek, Hebrew, Italian, Latin, Polish, Portuguese, Spanish, Swedish

    Magdalena

    Woman from Magdala; Woman from Kynthos; The Biblical Mary Magdalene Came from Magdala Area Near the Sea of Galilee

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