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Tertiary structure prediction tool for protein sequence
Phyre and Phyre2 (Protein Homology/AnalogY Recognition Engine; pronounced as fire) are free web-based services for protein structure prediction. Phyre
Phyre
2025 video game
Darkness and follows an original narrative focused on the Elder vampire Phyre, who awakens in early 21st-century Seattle during a historic snowstorm.
Vampire: The Masquerade – Bloodlines 2
Vampire:_The_Masquerade_–_Bloodlines_2
Multiplatform game engine
PhyreEngine is a license-only free to use game engine from Sony Interactive Entertainment, compatible with PlayStation 4, PlayStation 3, PlayStation VR
PhyreEngine
2021 single by Dream
[they] can", and that he had paid both Phyre and the animators over three times the amount they had asked for. Phyre Studios has since had mixed opinions
Mask_(Dream_song)
American industrial manufacturing company
Equity Research (July 12, 2016). "Parker-Hannifin Aerospace Unit to Develop Phyre's Technology". Nasdaq. Retrieved July 24, 2017. "Parker Bertea Gets $5-Million
Parker_Hannifin
2018 video game
Arts Director Martin Sahlin Composers Frida Johansson Henrik Oja Engine PhyreEngine Platforms PlayStation 4, Windows, Xbox One, Nintendo Switch Release
Unravel_Two
like this (with @ being the highest status prefix) :irc.server.net 353 Phyre = #SomeChannel :@WiZ If a client wants to receive all the channel status
List_of_IRC_commands
Discontinued multimedia platform used to add animation and interactivity to websites
10 major video game engines, including Unreal Engine 3, CryEngine, and PhyreEngine, and has been used to provide 3D interfaces for more than 150 major
Adobe_Flash
American musician and YouTuber (born 1999)
"I'm Glad It's Over (feat. CG5)" Vurb — Feature, writer "Happy Birthday" Phyre Productions — Feature "We Don't Talk About Bruno (Cover)" Caleb Hyles —
CG5_(musician)
French video game developer
produced and developed using the company's own modified version of Sony's PhyreEngine, called the "Silk Engine". It includes most of the features of its
Spiders_(company)
Sea anemone toxin
ATX-II 3D structure prediction model Confidence in the model: 47 residues (100%) modelled at >90% accuracy. Created by Phyre V 2.0
ATX-II
2021 video game
game engine, known as the Falcom Developer Kit (FDK), that replaced the PhyreEngine used in the Trails of Cold Steel series. Trails Through Daybreak was
The Legend of Heroes: Trails Through Daybreak
The_Legend_of_Heroes:_Trails_Through_Daybreak
2012 video game
hand-animated and physics-based movements. The game used Sony's in-house PhyreEngine. The game was designed to run consistently at 30 frames per second
Gravity_Rush
2017 video game
Like the previous Trails of Cold Steel entries, it was developed using the PhyreEngine game engine. The game was officially revealed in December 2016. Unlike
The Legend of Heroes: Trails of Cold Steel III
The_Legend_of_Heroes:_Trails_of_Cold_Steel_III
2013 video game
3 and PlayStation Vita since the late 2012. It was developed using the PhyreEngine game engine. The game was first released in Japan as Sen no Kiseki
The Legend of Heroes: Trails of Cold Steel
The_Legend_of_Heroes:_Trails_of_Cold_Steel
Video game engine developed by Epic Games
Frostbite Gamebryo GameSalad HeroEngine IW Leadwerks Marmalade MT Framework PhyreEngine Q RAGE Shark 3D Source Unigine Unity Unreal Engine 2 Unreal Engine
Unreal_Engine
2009 video game
Director Jenova Chen Designer Nicholas Clark Composer Vincent Diamante Engine PhyreEngine Platforms PlayStation 3 PlayStation Vita PlayStation 4 iOS Microsoft
Flower_(video_game)
Adventure game by Thatgamecompany
Middleton Artists Matt Nava Aaron Jessie Composer Austin Wintory Engine PhyreEngine Platforms PlayStation 3 PlayStation 4 Windows iOS Release PlayStation
Journey_(2012_video_game)
Phaser JavaScript JavaScript Yes 2D Cross-platform Vampire Survivors MIT PhyreEngine C++ Yes 3D PC, PlayStation Portable, PlayStation Vita, PlayStation
List_of_game_engines
Video game series
Baseball Developer Metalhead Software Publisher Metalhead Software Engine PhyreEngine Platforms Microsoft Windows PlayStation 3 PlayStation 4 Xbox One
Super_Mega_Baseball
American singer
Elite helped organize Phyre, Atlanta's first weeklong celebration of black gay, lesbian, bisexual, and transgender history. Phyre includes the controversial
Anye_Elite
2013 video game
Nishiono Mai Nakashita Composer Toshiko Tasaki Series Akiba's Trip Engine PhyreEngine Platforms PlayStation 3, PlayStation Vita, PlayStation 4, Microsoft
Akiba's Trip: Undead & Undressed
Akiba's_Trip:_Undead_&_Undressed
2006 indie game
(console) Designers Jenova Chen Nicholas Clark Composer Austin Wintory Engine PhyreEngine (console) Platforms Browser PlayStation 3 PlayStation Portable PlayStation
Flow_(video_game)
2020 video game
the Trails of Cold Steel games, Trails into Reverie was made using the PhyreEngine game engine and was the last game by Nihon Falcom to use it. NIS America
The Legend of Heroes: Trails into Reverie
The_Legend_of_Heroes:_Trails_into_Reverie
2016 video game
You tend to see more fantastical stuff." The game was developed on Sony's PhyreEngine. On 21 January 2016, EA abandoned the Unravel trademark after their
Unravel_(video_game)
2014 video game
Ponchos Developer Switchblade Monkeys Publisher Switchblade Monkeys Engine PhyreEngine Platforms PlayStation 4 Microsoft Windows Release PlayStation 4 December
Secret_Ponchos
2014 video game
the impending turbulent times together. Trails of Cold Steel II uses the PhyreEngine game engine. Trails of Cold Steel II was first released in Japan on
The Legend of Heroes: Trails of Cold Steel II
The_Legend_of_Heroes:_Trails_of_Cold_Steel_II
Protein found in humans
and lower than normal amounts of phenylalanine and tyrosine. i-TASSER and Phyre 2 predict C4orf50 to have a tertiary structure rich in alpha helices concentrated
Chromosome 4 open reading frame 50
Chromosome_4_open_reading_frame_50
2018 video game
McConkey Artists Anthony Chan Sylvain Coutouly Composer Jim Guthrie Engine PhyreEngine Platforms Windows, Xbox One, PlayStation 4 Release Windows, Xbox One
Below_(video_game)
Protein-coding gene in the species Homo sapiens
PHYRE. An α-helix from 18 amino acids of C1orf21.
C1orf21
2011 video game
Sohei Niikawa Yamazi Machina Composer Tenpei Sato Series Disgaea Engine PhyreEngine Platforms PlayStation 3 PlayStation Vita PlayStation 4 Nintendo Switch
Disgaea_4
2016 video game
Noriyoshi Fujimoto has said that Sony Interactive Entertainment's multiplatform PhyreEngine was chosen for ease of development across multiple PlayStation consoles
Dragon_Quest_Builders
2013 video game
Developer XGen Studios Publisher XGen Studios Designer Skye Boyes Engine PhyreEngine Platforms PlayStation 4 PlayStation 3 Windows Release PS4 NA: November
Super_Motherload
2010 video game
Kawachi Composers Ken Nakagawa Kazuki Yanagawa Series Ar tonelico Engine PhyreEngine Platform PlayStation 3 Release JP: January 28, 2010 NA: March 15,
Ar_Tonelico_Qoga
2012 video game
Composers Daisuke Achiwa Kazuki Yanagawa Yu Shimoda Series Atelier Engine PhyreEngine Platforms PlayStation 3, PlayStation Vita, PlayStation 4, Nintendo
Atelier Ayesha: The Alchemist of Dusk
Atelier_Ayesha:_The_Alchemist_of_Dusk
Block-based programming language
Frostbite Gamebryo GameSalad HeroEngine IW Leadwerks Marmalade MT Framework PhyreEngine Q RAGE Shark 3D Source Unigine Unity Unreal Engine 2 Unreal Engine
Snap!_(programming_language)
webserver FoldX Energy calculations and protein design Downloadable program Phyre, Phyre2 Remote template detection, alignment, 3D modeling, multi-templates
List of protein structure prediction software
List_of_protein_structure_prediction_software
Fuse, May 29, 2014. Simon, Mashaun D. (February 16, 2007). "Hearts A- Phyre': African-American Organizers Want to Make First Black Gay History Week
LGBTQ representation in hip-hop
LGBTQ_representation_in_hip-hop
Video game franchise
known as the Falcom Developer Kit (FDK), with the exception being Sony's PhyreEngine used for the Trails of Cold Steel games and Trails into Reverie. The
Trails_(series)
Remastered video game
Nojima Composers Masashi Hamauzu Junya Nakano Series Final Fantasy Engine PhyreEngine Platforms PlayStation 3 PlayStation Vita PlayStation 4 Windows Nintendo
Final Fantasy X/X-2 HD Remaster
Final_Fantasy_X/X-2_HD_Remaster
2012 video game
Hotline Miami is a 2012 top-down shooter game developed by Dennaton Games and published by Devolver Digital. Set in Miami in 1989, the game follows an
Hotline_Miami
2010 video game
Oya Shigeki Takayama Kenji Nagata Series Hyperdimension Neptunia Engine PhyreEngine Platforms PlayStation 3 PlayStation Vita Microsoft Windows PlayStation
Hyperdimension Neptunia (video game)
Hyperdimension_Neptunia_(video_game)
British video game developer
Codemasters and Sony Computer Entertainment using Sony Computer Entertainment's PhyreEngine cross-platform graphics engine. The Ego engine was developed to render
Codemasters
2004 action role-playing video game
change also resulted in a different plot which follows an elder vampire, Phyre, after they are awoken in modern Seattle. The sequel was released on 21
Vampire: The Masquerade – Bloodlines
Vampire:_The_Masquerade_–_Bloodlines
Discontinued game development middleware package
Crytek CryEngine 2 and CryEngine 3 Emergent Gamebryo and LightSpeed Sony PhyreEngine Forgelight Engine Infernal Engine BigWorld HeroEngine Trinigy Vision
Scaleform_GFx
Witch Lesbian Tob-13 Non-binary 2025 Vampire: The Masquerade – Bloodlines 2 Phyre (player character) Non-binary Players will be able to choose pronouns, with
List of video games with LGBTQ characters: 2020s
List_of_video_games_with_LGBTQ_characters:_2020s
2013 video game
Artist Takehito Harada (character designer) Composer Tenpei Sato Engine PhyreEngine Platforms PlayStation 3, PlayStation 4 Release PlayStation 3 JP: July
The Witch and the Hundred Knight
The_Witch_and_the_Hundred_Knight
Protein-coding gene in the species Homo sapiens
Table 1. Table 1: TMEM212 Protein Characteristics in Humans and Orthologs Phyre 2 and Ali2D predict TMEM212 to have a secondary structure rich in alpha
TMEM212
2018 video game
Like the previous Trails of Cold Steel entries, it was developed using the PhyreEngine game engine. The Nintendo Switch version was ported by Engine Software
The Legend of Heroes: Trails of Cold Steel IV
The_Legend_of_Heroes:_Trails_of_Cold_Steel_IV
2011 video game
Achiwa Kazuki Yanagawa Ken Nakagawa Miyoko Kobayashi Series Atelier Engine PhyreEngine Platforms PlayStation 3, PlayStation Vita, Nintendo Switch, PlayStation
Atelier Meruru: The Apprentice of Arland
Atelier_Meruru:_The_Apprentice_of_Arland
Storytelling device appearing in media
Lucia and Sue Drink potion magic Atelier Meruru: The Apprentice of Arland PhyreEngine/ Gust Co. Ltd. 2011 Meruru and Keina Switching pie Bugs Bunny & Taz:
Body swap appearances in media
Body_swap_appearances_in_media
2014 video game
Mutsumi Ishimura, Keisuke Sugiyama, Yuki Mori Series Onechanbara Engine PhyreEngine Platforms PlayStation 4, Microsoft Windows Release JP: October 30
Onechanbara_Z2:_Chaos
His group, particularly Lawrence Kelley, have developed the widely used Phyre/Phyre2 web server for protein structure prediction. This web resource has
Michael_Sternberg
Protein-coding gene in the species Homo sapiens
(2009). "Protein structure prediction on the web: a case study using the Phyre server". Nature Protocols. 4 (3): 363–371. doi:10.1038/nprot.2009.2. hdl:10044/1/18157
ABHD18
Free game engine
Frostbite Gamebryo GameSalad HeroEngine IW Leadwerks Marmalade MT Framework PhyreEngine Q RAGE Shark 3D Source Unigine Unity Unreal Engine 2 Unreal Engine
Defold
Single nucleotide in genomic DNA at which different sequence alternatives exist
change so doctors can determine pathogenicity of the mutant protein. PROVEAN PhyreRisk is a database which maps variants to experimental and predicted protein
Single-nucleotide polymorphism
Single-nucleotide_polymorphism
Protein
the web: a case study using the Phyre server. Kelley LA and Sternberg MJE. Nature Protocols 4, 363-371 (2009) "Phyre 2 Results for FAM227A_Whole_Protein"
FAM227A
2014 action role-playing video game
Home Interactive Producer Walid Miled Composer Olivier Deriviere Engine PhyreEngine Platforms PlayStation 3 PlayStation 4 Xbox 360 Microsoft Windows Linux
Bound_by_Flame
2016 video game
Spiders Publisher Focus Home Interactive Composer Olivier Deriviere Engine PhyreEngine Platforms Microsoft Windows PlayStation 4 Xbox One Release 28 June
The_Technomancer
Open-source Java software game library
Frostbite Gamebryo GameSalad HeroEngine IW Leadwerks Marmalade MT Framework PhyreEngine Q RAGE Shark 3D Source Unigine Unity Unreal Engine 2 Unreal Engine
LWJGL
(2009). "Protein structure prediction on the Web: a case study using the Phyre server". Nature Protocols. 4 (3): 363–371. doi:10.1038/nprot.2009.2. hdl:10044/1/18157
ZNF837
Type of biological prediction
(2009). "Protein structure prediction on the Web: a case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2
Protein_structure_prediction
2013 video game
Mars: War Logs Developer Spiders Publisher Focus Home Interactive Engine PhyreEngine Platforms Microsoft Windows, Xbox 360, PlayStation 3 Release Microsoft
Mars:_War_Logs
2009 video game
Factory Publishers JP: Idea Factory WW: NIS America Artist Tsunako Engine PhyreEngine Platform PlayStation 3 Release JP: October 1, 2009 EU: June 25, 2010
Trinity_Universe
2011 video game
cover Developer Seed Studios Publisher Sony Computer Entertainment Engine PhyreEngine Platform PlayStation 3 Release 2 June 2011 Genre Real-time tactics
Under_Siege_(2011_video_game)
Protein-coding gene in the species Homo sapiens
2019, https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=309291. "Phyre 2 Results For Undefined". Sbg.Bio.Ic.Ac.Uk, 2019, http://www.sbg.bio.ic
TMEM176B
Protein found in humans
Retrieved 2021-07-31. "SAPS Results". www.ebi.ac.uk. Retrieved 2021-07-31. "Phyre 2 Results for hsa_c1orf110". www.sbg.bio.ic.ac.uk. Archived from the original
CCDC190
Open-source game engine
Frostbite Gamebryo GameSalad HeroEngine IW Leadwerks Marmalade MT Framework PhyreEngine Q RAGE Shark 3D Source Unigine Unity Unreal Engine 2 Unreal Engine
GDevelop
Protein
abundance Chau-Fasman prediction for TMEM267 GOR4 prediction for TMEM267 Phyre 2 Prediction for TMEM267 The Human Protein Atlas entry on TMEM267 "CSS-Palm
TMEM267
Gene
Retrieved 2020-12-16. "Phyre 2 alignment of Undefined with c5doqC_". www.sbg.bio.ic.ac.uk. Retrieved 2020-12-18.[permanent dead link] "Phyre 2 alignment of Undefined
TMEM169
Game engine developed by Sierra On-Line
Frostbite Gamebryo GameSalad HeroEngine IW Leadwerks Marmalade MT Framework PhyreEngine Q RAGE Shark 3D Source Unigine Unity Unreal Engine 2 Unreal Engine
Sierra_Creative_Interpreter
2014 video game
Developer Natsume Atari Publisher Bandai Namco Games Series Godzilla Engine PhyreEngine Platforms PlayStation 3, PlayStation 4 Release PlayStation 3 JP: December
Godzilla_(2014_video_game)
2008 video game
Hyper Sea Story In Karibu Developer Sanyo Bussan Publisher Irem Engine PhyreEngine Platform PlayStation 3 Release PlayStation Network JP: July 2, 2008
PachiPara DL Hyper Sea Story In Karibu
PachiPara_DL_Hyper_Sea_Story_In_Karibu
Game engine developed by Sierra On-Line
Frostbite Gamebryo GameSalad HeroEngine IW Leadwerks Marmalade MT Framework PhyreEngine Q RAGE Shark 3D Source Unigine Unity Unreal Engine 2 Unreal Engine
Adventure_Game_Interpreter
2009 video game
Burn! Developer Doublesix Publisher Doublesix Designer Jim Mummery Engine PhyreEngine Platforms PlayStation 3 Microsoft Windows Mac OS X Release NA: March
Burn_Zombie_Burn
2015 video game
Fujioka Takeshi Abo Nobuo Uematsu Series Hyperdimension Neptunia Engine PhyreEngine Platforms PlayStation 4, Windows, Nintendo Switch Release PlayStation
Megadimension_Neptunia_VII
Method of protein structure prediction
proteins with sparse sequence profile. The RaptorX server is free to public. Phyre is a popular threading server combining HHsearch with ab initio and multiple-template
Threading_(protein_sequence)
Protein-coding gene in the species Homo sapiens
"SH3 domain-containing protein 21 isoform 2". NCBI. Retrieved 9 May 2013. "Phyre 2 Secondary Structure Analysis". Retrieved 14 May 2013. "PELE Analysis"
SH3D21
Protein-coding gene in the species Homo sapiens
genomatix.de. Archived from the original on 2021-12-18. Retrieved 2019-05-05. "Phyre 2 alignment of TEX9_____ with c1ciiA_". www.sbg.bio.ic.ac.uk. Archived from
TEX9
2012 video game
Ripstone Director Nifflas Programmer Maurice Sibrandi Series Knytt Engine PhyreEngine Platforms Linux, Microsoft Windows, OS X, PlayStation 3, PlayStation
Knytt_Underground
Protein-coding gene in the species Homo sapiens
secondary structure prediction". npsa-prabi.ibcp.fr. Retrieved 2020-05-03. "PHYRE Protein Fold Recognition Server". www.sbg.bio.ic.ac.uk. Retrieved 2020-05-03
C5orf46
Protein-coding gene in humans
Retrieved 7 March 2014. "Sulfinator". ExPASy. Retrieved 7 April 2014. "PHYRE 2 Protein Recognition Software". Retrieved 14 April 2014. Mason JM, Arndt
CCDC47
German video game designer
Call of Duty Black Ops 3, Battlefield 1, Mafia 3, Quake Champions, and Phyre. Engel has written or edited more than 20 books on graphics software development
Wolfgang_Engel
2010 Japanese video game
Okamura Artist Mel Kishida Composer Ken Nakagawa Series Atelier Engine PhyreEngine Platforms PlayStation 3, PlayStation Vita, Nintendo 3DS, Nintendo
Atelier Rorona: The Alchemist of Arland
Atelier_Rorona:_The_Alchemist_of_Arland
2012 video game
Developer VectorCell Publisher Lexis Numérique Director Paul Cuisset Engine PhyreEngine Platforms Xbox 360 PlayStation 3 Release WW: 11 January 2012 Genres
Amy_(video_game)
Extracellular matrix protein
splice variants of SNED1 that exhibited protein structure matches using the Phyre 2 database which is discussed under "Tertiary and Quaternary Structure"
SNED1
2010 video game
Mel Kishida Composers Kazuki Yanagawa Ken Nakagawa Series Atelier Engine PhyreEngine Platforms PlayStation 3, PlayStation Vita, Nintendo Switch, PlayStation
Atelier Totori: The Adventurer of Arland
Atelier_Totori:_The_Adventurer_of_Arland
Protein-coding gene in the species Homo sapiens
(2009). "Protein structure prediction on the Web: a case study using the Phyre server" (PDF). Nat Protoc. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157
FAM46C
Sabotage March 22, 2019 The International Mighty Mushroom March 23, 2019 Phyre Festival March 26, 2019 State Champs April 3, 2019 Dance Gavin Dance April
List of entertainment events at The Van Buren
List_of_entertainment_events_at_The_Van_Buren
Protein
is no transmembrane helix. The protein structure making program called Phyre is used to create the predicted structure of CFAP157. There is no known
CFAP157
2010 video game
Developer Alvion Publishers JP: Alvion WW: Sony Computer Entertainment Engine PhyreEngine Platforms PlayStation 3 PlayStation Vita PlayStation 4 Release PlayStation
Malicious_(video_game)
Protein-coding gene in the species Homo sapiens
29 (5): 535–9. doi:10.1016/j.fertnstert.2009.07.1478. PMID 19821082. "Phyre 2 Results for Tex55____". www.sbg.bio.ic.ac.uk. Archived from the original
TEX55
Protein-coding gene in humans
Web-based 3D Structure Viewer". www.ncbi.nlm.nih.gov. Retrieved 2025-07-29. "Phyre 2 Results for Undefined". www.sbg.bio.ic.ac.uk. Retrieved 2025-07-29. "Find
Chromosome 18 open reading frame 12
Chromosome_18_open_reading_frame_12
2009 video game
Antony Blackett, James Everett, Jonathan Brown Composer Module Engine PhyreEngine Unity (Remastered and Remastered Deluxe) Platforms PlayStation 3,
Shatter_(video_game)
2015 video game
Publishers Roll7 Devolver Digital (PC, Android, Switch) Team17 (Xbox One) Engine PhyreEngine Platforms Android Linux Microsoft Windows OS X PlayStation 4 PlayStation
OlliOlli2: Welcome to Olliwood
OlliOlli2:_Welcome_to_Olliwood
2011 video game
Developer Big Ant Studios Publisher Tru Blu Entertainment Series AFL Engine PhyreEngine Platforms Microsoft Windows, PlayStation 3, Xbox 360 Release 21 April
AFL_Live
2D competitive fighting game
Galaxy Designer Adam Heart Artist Anna Heart Composer Harrison Pretat Engine PhyreEngine Platforms Windows, PlayStation 3, PlayStation 4, Vita, Xbox One Release
Divekick
2011 video game
International (Re;Birth2) Artist Tsunako Series Hyperdimension Neptunia Engine PhyreEngine Platforms PlayStation 3 PlayStation 4 PlayStation Vita Windows Nintendo
Hyperdimension_Neptunia_mk2
Protein-coding gene in the species Homo sapiens
2009). "Protein structure prediction on the web: a case study using the Phyre server". Nature Protocols. 4 (3): 363–371. doi:10.1038/nprot.2009.2. hdl:10044/1/18157
Multiple epidermal growth factor-like domains 8
Multiple_epidermal_growth_factor-like_domains_8
Protein found in humans
C9orf43 gene & protein". www.uniprot.org. Retrieved 2018-05-05. "ELM". "Phyre 2 Results for Undefined". www.sbg.bio.ic.ac.uk. Archived from the original
Chromosome 9 open reading frame 43
Chromosome_9_open_reading_frame_43
PHYRE
PHYRE
PHYRE
PHYRE
Boy/Male
Hebrew
Strong; carried; brave. Amos was an 8th century B.C. Old Testament prophet.
Girl/Female
English
Innocent. Last born. The name of the heroine of Shakespeare's play Cymbehoe as a result of a...
Boy/Male
Hindu, Indian
God Name
Boy/Male
Gaelic
Blond.
Male
Celtic
, the great youth.
Boy/Male
Indian, Malayalam
Protecting
Biblical
City of streets, Populous city
Boy/Male
Indian, Punjabi, Sikh
Union with God
Boy/Male
Arabic
Prince; King's Son
Boy/Male
Arabic, Muslim
Perfecting; Completing
PHYRE
PHYRE
PHYRE
PHYRE
PHYRE